2x83

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{{Seed}}
 
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[[Image:2x83.jpg|left|200px]]
 
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==Evolutionary basis of HIV restriction by the antiretroviral TRIMCyp==
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The line below this paragraph, containing "STRUCTURE_2x83", creates the "Structure Box" on the page.
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<StructureSection load='2x83' size='340' side='right'caption='[[2x83]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2x83]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_lw12.3_isolate Human immunodeficiency virus type 1 lw12.3 isolate] and [https://en.wikipedia.org/wiki/Macaca_fascicularis Macaca fascicularis]. The July 2013 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''HIV Capsid'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2013_7 10.2210/rcsb_pdb/mom_2013_7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X83 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2X83 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2x83 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x83 OCA], [https://pdbe.org/2x83 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2x83 RCSB], [https://www.ebi.ac.uk/pdbsum/2x83 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2x83 ProSAT]</span></td></tr>
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{{STRUCTURE_2x83| PDB=2x83 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/E9MJX7_9HIV1 E9MJX7_9HIV1]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x8/2x83_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2x83 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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TRIMCyps are anti-retroviral proteins that have arisen independently in New World and Old World primates. All TRIMCyps comprise a CypA domain fused to the tripartite domains of TRIM5alpha but they have distinct lentiviral specificities, conferring HIV-1 restriction in New World owl monkeys and HIV-2 restriction in Old World rhesus macaques. Here we provide evidence that Asian macaque TRIMCyps have acquired changes that switch restriction specificity between different lentiviral lineages, resulting in species-specific alleles that target different viruses. Structural, thermodynamic and viral restriction analysis suggests that a single mutation in the Cyp domain, R69H, occurred early in macaque TRIMCyp evolution, expanding restriction specificity to the lentiviral lineages found in African green monkeys, sooty mangabeys and chimpanzees. Subsequent mutations have enhanced restriction to particular viruses but at the cost of broad specificity. We reveal how specificity is altered by a scaffold mutation, E143K, that modifies surface electrostatics and propagates conformational changes into the active site. Our results suggest that lentiviruses may have been important pathogens in Asian macaques despite the fact that there are no reported lentiviral infections in current macaque populations.
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===EVOLUTIONARY BASIS OF HIV RESTRICTION BY THE ANTIRETROVIRAL TRIMCYP===
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Conformational adaptation of Asian macaque TRIMCyp directs lineage specific antiviral activity.,Ylinen LM, Price AJ, Rasaiyaah J, Hue S, Rose NJ, Marzetta F, James LC, Towers GJ PLoS Pathog. 2010 Aug 19;6(8). pii: e1001062. PMID:20808866<ref>PMID:20808866</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2x83" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20808866}}, adds the Publication Abstract to the page
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20808866 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20808866}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: HIV Capsid]]
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2X83 is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X83 OCA].
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[[Category: Human immunodeficiency virus type 1 lw12 3 isolate]]
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[[Category: Large Structures]]
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==Reference==
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[[Category: Macaca fascicularis]]
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<ref group="xtra">PMID:20808866</ref><references group="xtra"/>
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Human immunodeficiency virus 1]]
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[[Category: James LC]]
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[[Category: James, L C.]]
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[[Category: Price AJ]]
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[[Category: Price, A J.]]
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[[Category: Restriction factor immunity]]
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[[Category: Trim]]
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[[Category: Viral protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:46:06 2010''
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Current revision

Evolutionary basis of HIV restriction by the antiretroviral TRIMCyp

PDB ID 2x83

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