This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ojc
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3ojc.jpg|left|200px]] | ||
| - | + | ==Crystal structure of a putative Asp/Glu Racemase from Yersinia pestis== | |
| - | + | <StructureSection load='3ojc' size='340' side='right' caption='[[3ojc]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3ojc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OJC FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEZ:HEXANE-1,6-DIOL'>HEZ</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">racX, YPO2758, YP_2405 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ojc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ojc OCA], [http://pdbe.org/3ojc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ojc RCSB], [http://www.ebi.ac.uk/pdbsum/3ojc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ojc ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[Category: Yersinia pestis]] | + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oj/3ojc_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Anderson, S M | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Anderson, W F | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Kudritska, M | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ojc ConSurf]. |
| - | [[Category: Kwon, K | + | <div style="clear:both"></div> |
| - | [[Category: Savchenko, A | + | __TOC__ |
| - | [[Category: Wawrzak, Z | + | </StructureSection> |
| + | [[Category: Yersinia pestis co92]] | ||
| + | [[Category: Anderson, S M]] | ||
| + | [[Category: Anderson, W F]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Kudritska, M]] | ||
| + | [[Category: Kwon, K]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Wawrzak, Z]] | ||
[[Category: Alpha beta]] | [[Category: Alpha beta]] | ||
[[Category: Asp/glu/hydantoin racemase family]] | [[Category: Asp/glu/hydantoin racemase family]] | ||
| - | [[Category: Center for structural genomics of infectious disease]] | ||
[[Category: Csgid]] | [[Category: Csgid]] | ||
[[Category: Isomerase]] | [[Category: Isomerase]] | ||
| - | [[Category: | + | [[Category: Rossmann fold]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a putative Asp/Glu Racemase from Yersinia pestis
| |||||||||||
