This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rof

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 1 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1rof.png|left|200px]]
 
-
<!--
+
==NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA==
-
The line below this paragraph, containing "STRUCTURE_1rof", creates the "Structure Box" on the page.
+
<StructureSection load='1rof' size='340' side='right'caption='[[1rof]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1rof]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ROF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ROF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
{{STRUCTURE_1rof| PDB=1rof | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rof FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rof OCA], [https://pdbe.org/1rof PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rof RCSB], [https://www.ebi.ac.uk/pdbsum/1rof PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rof ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FER_THEMA FER_THEMA] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ro/1rof_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rof ConSurf].
 +
<div style="clear:both"></div>
-
===NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA===
+
==See Also==
-
 
+
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_8647119}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 8647119 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_8647119}}
+
-
 
+
-
==About this Structure==
+
-
1ROF is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ROF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:8647119</ref><references group="xtra"/>
+
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Bentrop, D.]]
+
[[Category: Bentrop D]]
-
[[Category: Darimont, B.]]
+
[[Category: Darimont B]]
-
[[Category: Roesch, P.]]
+
[[Category: Roesch P]]
-
[[Category: Sterner, R.]]
+
[[Category: Sterner R]]
-
[[Category: Sticht, H.]]
+
[[Category: Sticht H]]
-
[[Category: Wildegger, G.]]
+
[[Category: Wildegger G]]
-
[[Category: Electron transport]]
+
-
[[Category: Iron-sulfur]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:33:40 2010''
+

Current revision

NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA

PDB ID 1rof

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools