1rof

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:20, 30 October 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1rof.png|left|200px]]
 
-
<!--
+
==NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA==
-
The line below this paragraph, containing "STRUCTURE_1rof", creates the "Structure Box" on the page.
+
<StructureSection load='1rof' size='340' side='right'caption='[[1rof]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1rof]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ROF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ROF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rof FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rof OCA], [https://pdbe.org/1rof PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rof RCSB], [https://www.ebi.ac.uk/pdbsum/1rof PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rof ProSAT]</span></td></tr>
-
{{STRUCTURE_1rof| PDB=1rof | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FER_THEMA FER_THEMA] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ro/1rof_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rof ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The solution structure of the 60-residue 1[Fe4-S4] ferredoxin from the hyperthermophilic bacterium Thermotoga maritima was determined based on 683 distance and 35 dihedral angle restraints that were obtained from NMR data. In addition, data known from crystallographic studies of ferredoxins was used for modeling of the iron-sulfur cluster and its environment. The protein shows a globular fold very similar to the fold of the related 1[Fe4-S4] ferredoxins from Desulfovibrio gigas and Desulfovibrio africanus, and elements of regular secondary structure similar to those in other ferredoxins were found in the T. maritima protein. In particular, the T. maritima protein displayed a beta-sheet structure made up of strands located at the very NH(2) and COOH termini of the protein, and an internal alpha-helix. The internal beta-sheet observed in the D. gigas and D. africanus ferredoxins could not be confirmed in T. maritima ferredoxin and is thus suggested to be only weakly present or even absent in this protein. This result suggests that thermostability in ferredoxins is not necessarily correlated with the content of stable elements of regular secondary structure.
-
===NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA===
+
An NMR-derived model for the solution structure of oxidized Thermotoga maritima 1[Fe4-S4] ferredoxin.,Sticht H, Wildegger G, Bentrop D, Darimont B, Sterner R, Rosch P Eur J Biochem. 1996 May 1;237(3):726-35. PMID:8647119<ref>PMID:8647119</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1rof" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_8647119}}, adds the Publication Abstract to the page
+
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 8647119 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_8647119}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
1ROF is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ROF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:8647119</ref><references group="xtra"/>
+
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Bentrop, D.]]
+
[[Category: Bentrop D]]
-
[[Category: Darimont, B.]]
+
[[Category: Darimont B]]
-
[[Category: Roesch, P.]]
+
[[Category: Roesch P]]
-
[[Category: Sterner, R.]]
+
[[Category: Sterner R]]
-
[[Category: Sticht, H.]]
+
[[Category: Sticht H]]
-
[[Category: Wildegger, G.]]
+
[[Category: Wildegger G]]
-
[[Category: Electron transport]]
+
-
[[Category: Iron-sulfur]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:33:40 2010''
+

Current revision

NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA

PDB ID 1rof

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rof"
Personal tools