This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zni

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:58, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2zni.png|left|200px]]
 
-
<!--
+
==Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense==
-
The line below this paragraph, containing "STRUCTURE_2zni", creates the "Structure Box" on the page.
+
<StructureSection load='2zni' size='340' side='right'caption='[[2zni]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2zni]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZNI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZNI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_2zni| PDB=2zni | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zni FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zni OCA], [https://pdbe.org/2zni PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zni RCSB], [https://www.ebi.ac.uk/pdbsum/2zni PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zni ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B0S4P3_DESHA B0S4P3_DESHA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zn/2zni_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zni ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_19118381}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19118381 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_19118381}}
+
-
 
+
-
==About this Structure==
+
-
2ZNI is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZNI OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19118381</ref><references group="xtra"/>
+
[[Category: Desulfitobacterium hafniense]]
[[Category: Desulfitobacterium hafniense]]
-
[[Category: Araiso, Y.]]
+
[[Category: Large Structures]]
-
[[Category: Ishitani, R.]]
+
[[Category: Araiso Y]]
-
[[Category: Nozawa, K.]]
+
[[Category: Ishitani R]]
-
[[Category: Nureki, O.]]
+
[[Category: Nozawa K]]
-
[[Category: Soll, D.]]
+
[[Category: Nureki O]]
-
[[Category: Ligase/rna complex]]
+
[[Category: Soll D]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 12:02:38 2010''
+

Current revision

Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense

PDB ID 2zni

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools