This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3gdd
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3gdd.png|left|200px]] | ||
| - | + | ==An inverted anthraquinone-DNA crystal structure== | |
| - | + | <StructureSection load='3gdd' size='340' side='right'caption='[[3gdd]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3gdd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GDD FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5BD:N,N-(9,10-DIOXO-9,10-DIHYDROANTHRACENE-2,7-DIYL)BIS[2-(DIMETHYLAMINO)ACETAMIDE]'>5BD</scene>, <scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdd OCA], [https://pdbe.org/3gdd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gdd RCSB], [https://www.ebi.ac.uk/pdbsum/3gdd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdd ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | < | + | [[Category: De Luchi D]] |
| - | + | [[Category: Gouyette C]] | |
| - | + | [[Category: Subirana JA]] | |
| - | + | [[Category: Wright G]] | |
| - | + | ||
| - | + | ||
| - | == | + | |
| - | + | ||
| - | + | ||
| - | == | + | |
| - | < | + | |
| - | [ | + | |
| - | [ | + | |
| - | [ | + | |
| - | [ | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
Current revision
An inverted anthraquinone-DNA crystal structure
| |||||||||||
