We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

3jxp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:05, 6 September 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3jxp.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida==
-
The line below this paragraph, containing "STRUCTURE_3jxp", creates the "Structure Box" on the page.
+
<StructureSection load='3jxp' size='340' side='right'caption='[[3jxp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3jxp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JXP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3jxp| PDB=3jxp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jxp OCA], [https://pdbe.org/3jxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jxp RCSB], [https://www.ebi.ac.uk/pdbsum/3jxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jxp ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PQQB_PSEPK PQQB_PSEPK] May be involved in the transport of PQQ or its precursor to the periplasm (By similarity).
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3JXP is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida_kt2440 Pseudomonas putida kt2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXP OCA].
+
Check<jmol>
-
[[Category: Pseudomonas putida kt2440]]
+
<jmolCheckbox>
-
[[Category: Metlitzky, M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/3jxp_consurf.spt"</scriptWhenChecked>
-
[[Category: Schwarzenbacher, R.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Alpha-beta protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Biosynthetic protein]]
+
</jmolCheckbox>
-
[[Category: Pqq biosynthesis]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jxp ConSurf].
-
[[Category: Transport]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 14:44:01 2010''
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas putida KT2440]]
 +
[[Category: Metlitzky M]]
 +
[[Category: Schwarzenbacher R]]

Current revision

Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida

PDB ID 3jxp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools