2rc3

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(New page: 200px<br /><applet load="2rc3" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rc3, resolution 1.60&Aring;" /> '''Crystal structure of...)
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[[Image:2rc3.jpg|left|200px]]<br /><applet load="2rc3" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2rc3, resolution 1.60&Aring;" />
 
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'''Crystal structure of CBS domain, NE2398'''<br />
 
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==Overview==
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==Crystal structure of CBS domain, NE2398==
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We tested the general applicability of in situ proteolysis to form protein, crystals suitable for structure determination by adding a protease, (chymotrypsin or trypsin) digestion step to crystallization trials of 55, bacterial and 14 human proteins that had proven recalcitrant to our best, efforts at crystallization or structure determination. This is a work in, progress; so far we determined structures of 9 bacterial proteins and the, human aminoimidazole ribonucleotide synthetase (AIRS) domain.
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<StructureSection load='2rc3' size='340' side='right'caption='[[2rc3]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[2rc3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea_ATCC_19718 Nitrosomonas europaea ATCC 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RC3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RC3 FirstGlance]. <br>
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2RC3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea_atcc_19718 Nitrosomonas europaea atcc 19718] with <scene name='pdbligand=BR:'>BR</scene> and <scene name='pdbligand=NAD:'>NAD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RC3 OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rc3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rc3 OCA], [https://pdbe.org/2rc3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rc3 RCSB], [https://www.ebi.ac.uk/pdbsum/2rc3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rc3 ProSAT], [https://www.topsan.org/Proteins/MCSG/2rc3 TOPSAN]</span></td></tr>
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In situ proteolysis for protein crystallization and structure determination., Dong A, Xu X, Edwards AM, Chang C, Chruszcz M, Cuff M, Cymborowski M, Leo RD, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, Ignatchenko A, Joachimiak A, Klostermann N, Kim Y, Korniyenko Y, Minor W, Que Q, Savchenko A, Skarina T, Tan K, Yakunin A, Yee A, Yim V, Zhang R, Zheng H, Akutsu M, Arrowsmith C, Avvakumov GV, Bochkarev A, Dahlgren LG, Dhe-Paganon S, Dimov S, Dombrovski L, Finerty P Jr, Flodin S, Flores A, Graslund S, Hammerstrom M, Herman MD, Hong BS, Hui R, Johansson I, Liu Y, Nilsson M, Nedyalkova L, Nordlund P, Nyman T, Min J, Ouyang H, Park HW, Qi C, Rabeh W, Shen L, Shen Y, Sukumard D, Tempel W, Tong Y, Tresagues L, Vedadi M, Walker JR, Weigelt J, Welin M, Wu H, Xiao T, Zeng H, Zhu H, Nat Methods. 2007 Nov 4;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17982461 17982461]
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</table>
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[[Category: Nitrosomonas europaea atcc 19718]]
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== Function ==
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[[Category: Single protein]]
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[https://www.uniprot.org/uniprot/Q82SE2_NITEU Q82SE2_NITEU]
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[[Category: Dong, A.]]
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== Evolutionary Conservation ==
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[[Category: Edwards, A.M.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Joachimiak, A.]]
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Check<jmol>
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[[Category: Korniyenko, Y.]]
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<jmolCheckbox>
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[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rc/2rc3_consurf.spt"</scriptWhenChecked>
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[[Category: Savchenko, A.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Walker, J.R.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Xu, X.]]
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</jmolCheckbox>
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[[Category: Yakunin, A.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rc3 ConSurf].
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[[Category: Zheng, H.]]
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<div style="clear:both"></div>
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[[Category: BR]]
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__TOC__
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[[Category: NAD]]
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</StructureSection>
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[[Category: br]]
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[[Category: Large Structures]]
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[[Category: cbs domain]]
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[[Category: Nitrosomonas europaea ATCC 19718]]
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[[Category: in situ proteolysis]]
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[[Category: Dong A]]
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[[Category: mcsg]]
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[[Category: Edwards AM]]
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[[Category: midwest center for structural genomics]]
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[[Category: Joachimiak A]]
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[[Category: protein structure initiative]]
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[[Category: Korniyenko Y]]
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[[Category: psi-2]]
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[[Category: Savchenko A]]
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[[Category: structural genomics]]
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[[Category: Walker JR]]
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[[Category: unknown function]]
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[[Category: Xu X]]
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[[Category: Yakunin A]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 10:44:40 2008''
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[[Category: Zheng H]]

Current revision

Crystal structure of CBS domain, NE2398

PDB ID 2rc3

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