2qdj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2qdj" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qdj, resolution 2.00&Aring;" /> '''Crystal structure of...)
Current revision (01:21, 21 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qdj.jpg|left|200px]]<br /><applet load="2qdj" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2qdj, resolution 2.00&Aring;" />
 
-
'''Crystal structure of the Retinoblastoma protein N-domain provides insight into tumor suppression, ligand interaction and holoprotein architecture'''<br />
 
-
==Overview==
+
==Crystal structure of the Retinoblastoma protein N-domain provides insight into tumor suppression, ligand interaction and holoprotein architecture==
-
The retinoblastoma susceptibility protein, Rb, has a key role in, regulating cell-cycle progression via interactions involving the central, "pocket" and C-terminal regions. While the N-terminal domain of Rb is, dispensable for this function, it is nonetheless strongly conserved and, harbors missense mutations found in hereditary retinoblastoma, indicating, that disruption of its function is oncogenic. The crystal structure of the, Rb N-terminal domain (RbN), reveals a globular entity formed by two, rigidly connected cyclin-like folds. The similarity of RbN to the A and B, boxes of the Rb pocket domain suggests that Rb evolved through domain, duplication. Structural and functional analysis provides insight into, oncogenicity of mutations in RbN and identifies a unique, phosphorylation-regulated site of protein interaction. Additionally, this, analysis suggests a coherent conformation for the Rb holoprotein in which, RbN and pocket domains directly interact, and which can be modulated, through ligand binding and possibly Rb phosphorylation.
+
<StructureSection load='2qdj' size='340' side='right'caption='[[2qdj]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2qdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QDJ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qdj OCA], [https://pdbe.org/2qdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qdj RCSB], [https://www.ebi.ac.uk/pdbsum/2qdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qdj ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qd/2qdj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qdj ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The retinoblastoma susceptibility protein, Rb, has a key role in regulating cell-cycle progression via interactions involving the central "pocket" and C-terminal regions. While the N-terminal domain of Rb is dispensable for this function, it is nonetheless strongly conserved and harbors missense mutations found in hereditary retinoblastoma, indicating that disruption of its function is oncogenic. The crystal structure of the Rb N-terminal domain (RbN), reveals a globular entity formed by two rigidly connected cyclin-like folds. The similarity of RbN to the A and B boxes of the Rb pocket domain suggests that Rb evolved through domain duplication. Structural and functional analysis provides insight into oncogenicity of mutations in RbN and identifies a unique phosphorylation-regulated site of protein interaction. Additionally, this analysis suggests a coherent conformation for the Rb holoprotein in which RbN and pocket domains directly interact, and which can be modulated through ligand binding and possibly Rb phosphorylation.
-
==About this Structure==
+
Crystal structure of the retinoblastoma protein N domain provides insight into tumor suppression, ligand interaction, and holoprotein architecture.,Hassler M, Singh S, Yue WW, Luczynski M, Lakbir R, Sanchez-Sanchez F, Bader T, Pearl LH, Mittnacht S Mol Cell. 2007 Nov 9;28(3):371-85. PMID:17996702<ref>PMID:17996702</ref>
-
2QDJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDJ OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Crystal structure of the retinoblastoma protein N domain provides insight into tumor suppression, ligand interaction, and holoprotein architecture., Hassler M, Singh S, Yue WW, Luczynski M, Lakbir R, Sanchez-Sanchez F, Bader T, Pearl LH, Mittnacht S, Mol Cell. 2007 Nov 9;28(3):371-85. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17996702 17996702]
+
</div>
-
[[Category: Homo sapiens]]
+
<div class="pdbe-citations 2qdj" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Hassler, M.]]
+
-
[[Category: Mittnacht, S.]]
+
-
[[Category: Pearl, L.H.]]
+
-
[[Category: antitumor protein]]
+
-
[[Category: cyclin fold]]
+
-
[[Category: cyclin wedge]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 10:52:42 2008''
+
==See Also==
 +
*[[Retinoblastoma protein|Retinoblastoma protein]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Hassler M]]
 +
[[Category: Mittnacht S]]
 +
[[Category: Pearl LH]]

Current revision

Crystal structure of the Retinoblastoma protein N-domain provides insight into tumor suppression, ligand interaction and holoprotein architecture

PDB ID 2qdj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools