2vdj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2vdj" size="350" color="white" frame="true" align="right" spinBox="true" caption="2vdj, resolution 2.00&Aring;" /> '''CRYSTAL STRUCTURE OF...)
Current revision (08:45, 15 November 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2vdj.jpg|left|200px]]<br /><applet load="2vdj" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2vdj, resolution 2.00&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF HOMOSERINE O-ACETYLTRANSFERASE (META) FROM BACILLUS CEREUS WITH HOMOSERINE'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Homoserine O-acetyltransferase (metA) from Bacillus Cereus with Homoserine==
-
2VDJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=HSE:'>HSE</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Homoserine_O-succinyltransferase Homoserine O-succinyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.46 2.3.1.46] Known structural/functional Sites: <scene name='pdbsite=AC1:So4 Binding Site For Chain A'>AC1</scene> and <scene name='pdbsite=AC2:Hse Binding Site For Chain A'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDJ OCA].
+
<StructureSection load='2vdj' size='340' side='right'caption='[[2vdj]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
[[Category: Bacillus cereus]]
+
== Structural highlights ==
-
[[Category: Homoserine O-succinyltransferase]]
+
<table><tr><td colspan='2'>[[2vdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VDJ FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
[[Category: Arkus, K.A.J.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HSE:L-HOMOSERINE'>HSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Cahoon, R.E.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vdj OCA], [https://pdbe.org/2vdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vdj RCSB], [https://www.ebi.ac.uk/pdbsum/2vdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vdj ProSAT]</span></td></tr>
-
[[Category: Jez, J.M.]]
+
</table>
-
[[Category: Zubieta, C.]]
+
== Function ==
-
[[Category: HSE]]
+
[https://www.uniprot.org/uniprot/METAA_BACC1 METAA_BACC1] Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. Utilizes a ping-pong kinetic mechanism in which the acetyl group of acetyl-CoA is initially transferred to the enzyme to form an acetyl-enzyme intermediate before subsequent transfer to homoserine to form the final product, O-acetylhomoserine. Cannot use succinyl-CoA as the acyl donor.<ref>PMID:18216013</ref>
-
[[Category: SO4]]
+
== Evolutionary Conservation ==
-
[[Category: acyltransferase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: amino-acid biosynthesis]]
+
Check<jmol>
-
[[Category: cytoplasm]]
+
<jmolCheckbox>
-
[[Category: homoserine]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/2vdj_consurf.spt"</scriptWhenChecked>
-
[[Category: homoserine transacetylase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: homoserine transsuccinylase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: methionine biosynthesis]]
+
</jmolCheckbox>
-
[[Category: transferase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vdj ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Bacteria and yeast rely on either homoserine transsuccinylase (HTS, metA) or homoserine transacetylase (HTA; met2) for the biosynthesis of methionine. Although HTS and HTA catalyze similar chemical reactions, these proteins are typically unrelated in both sequence and three-dimensional structure. Here we present the 2.0 A resolution x-ray crystal structure of the Bacillus cereus metA protein in complex with homoserine, which provides the first view of a ligand bound to either HTA or HTS. Surprisingly, functional analysis of the B. cereus metA protein shows that it does not use succinyl-CoA as a substrate. Instead, the protein catalyzes the transacetylation of homoserine using acetyl-CoA. Therefore, the B. cereus metA protein functions as an HTA despite greater than 50% sequence identity with bona fide HTS proteins. This result emphasizes the need for functional confirmation of annotations of enzyme function based on either sequence or structural comparisons. Kinetic analysis of site-directed mutants reveals that the B. cereus metA protein and the E. coli HTS share a common catalytic mechanism. Structural and functional examination of the B. cereus metA protein reveals that a single amino acid in the active site determines acetyl-CoA (Glu-111) versus succinyl-CoA (Gly-111) specificity in the metA-like of acyltransferases. Switching of this residue provides a mechanism for evolving substrate specificity in bacterial methionine biosynthesis. Within this enzyme family, HTS and HTA activity likely arises from divergent evolution in a common structural scaffold with conserved catalytic machinery and homoserine binding sites.
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 10:56:34 2008''
+
A single amino acid change is responsible for evolution of acyltransferase specificity in bacterial methionine biosynthesis.,Zubieta C, Arkus KA, Cahoon RE, Jez JM J Biol Chem. 2008 Mar 21;283(12):7561-7. Epub 2008 Jan 22. PMID:18216013<ref>PMID:18216013</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2vdj" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacillus cereus]]
 +
[[Category: Large Structures]]
 +
[[Category: Arkus KAJ]]
 +
[[Category: Cahoon RE]]
 +
[[Category: Jez JM]]
 +
[[Category: Zubieta C]]

Current revision

Crystal Structure of Homoserine O-acetyltransferase (metA) from Bacillus Cereus with Homoserine

PDB ID 2vdj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools