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2vll

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(New page: 200px<br /><applet load="2vll" size="350" color="white" frame="true" align="right" spinBox="true" caption="2vll, resolution 1.60&Aring;" /> '''THE STRUCTURAL DYNAM...)
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[[Image:2vll.jpg|left|200px]]<br /><applet load="2vll" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2vll, resolution 1.60&Aring;" />
 
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'''THE STRUCTURAL DYNAMICS AND ENERGETICS OF AN IMMUNODOMINANT T-CELL RECEPTOR ARE PROGRAMMED BY ITS VBETA DOMAIN'''<br />
 
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==About this Structure==
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==The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain==
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2VLL is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLL OCA].
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<StructureSection load='2vll' size='340' side='right'caption='[[2vll]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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[[Category: Homo sapiens]]
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== Structural highlights ==
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[[Category: Protein complex]]
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<table><tr><td colspan='2'>[[2vll]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VLL FirstGlance]. <br>
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[[Category: Bell, J.]]
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1uqs|1uqs]], [[1bd2|1bd2]], [[2ak4|2ak4]], [[1ypz|1ypz]], [[1im3|1im3]], [[1uxw|1uxw]], [[1i7u|1i7u]], [[1c16|1c16]], [[1hsa|1hsa]], [[2axf|2axf]], [[1gzp|1gzp]], [[2bnq|2bnq]], [[1w72|1w72]], [[2jcc|2jcc]], [[2bck|2bck]], [[1de4|1de4]], [[1n2r|1n2r]], [[1exu|1exu]], [[1qrn|1qrn]], [[2hla|2hla]], [[1mhe|1mhe]], [[1im9|1im9]], [[1eez|1eez]], [[1jht|1jht]], [[1qqd|1qqd]], [[1qr1|1qr1]], [[1zs8|1zs8]], [[1hla|1hla]], [[1jgd|1jgd]], [[1i1y|1i1y]], [[1vgk|1vgk]], [[1age|1age]], [[1ur7|1ur7]], [[1hhg|1hhg]], [[1s9x|1s9x]], [[1duz|1duz]], [[1a9e|1a9e]], [[2clr|2clr]], [[3hla|3hla]], [[1m05|1m05]], [[1tvb|1tvb]], [[2v2w|2v2w]], [[1onq|1onq]], [[1a1n|1a1n]], [[1lp9|1lp9]], [[1zsd|1zsd]], [[1m6o|1m6o]], [[2bsu|2bsu]], [[1hhk|1hhk]], [[1zt4|1zt4]], [[1hsb|1hsb]], [[1x7q|1x7q]], [[1ce6|1ce6]], [[1py4|1py4]], [[1syv|1syv]], [[2j8u|2j8u]], [[1sys|1sys]], [[1ogt|1ogt]], [[1cg9|1cg9]], [[1p7q|1p7q]], [[1q94|1q94]], [[1jnj|1jnj]], [[1agb|1agb]], [[2d31|2d31]], [[1aqd|1aqd]], [[1xz0|1xz0]], [[1lds|1lds]], [[1hhh|1hhh]], [[1tvh|1tvh]], [[1xr8|1xr8]], [[2bss|2bss]], [[1e28|1e28]], [[1a1m|1a1m]], [[2v2x|2v2x]], [[1xr9|1xr9]], [[2gj6|2gj6]], [[1efx|1efx]], [[1qlf|1qlf]], [[2av1|2av1]], [[1tmc|1tmc]], [[1qsf|1qsf]], [[1duy|1duy]], [[1jge|1jge]], [[1kpr|1kpr]], [[2hjl|2hjl]], [[1qew|1qew]], [[1w0v|1w0v]], [[1k5n|1k5n]], [[1ao7|1ao7]], [[2bnr|2bnr]], [[1xh3|1xh3]], [[2bst|2bst]], [[1mi5|1mi5]], [[2h26|2h26]], [[1s9y|1s9y]], [[1a1o|1a1o]], [[1agf|1agf]], [[2a83|2a83]], [[1oga|1oga]], [[2f8o|2f8o]], [[2cii|2cii]], [[2bsv|2bsv]], [[1i7r|1i7r]], [[1jf1|1jf1]], [[2c7u|2c7u]], [[2f74|2f74]], [[1e27|1e27]], [[1w0w|1w0w]], [[1gzq|1gzq]], [[1uxs|1uxs]], [[1akj|1akj]], [[2hjk|2hjk]], [[2vb5|2vb5]], [[1agd|1agd]], [[1r3h|1r3h]], [[1eey|1eey]], [[1i7t|1i7t]], [[1i4f|1i4f]], [[1ydp|1ydp]], [[2bsr|2bsr]], [[2vlj|2vlj]], [[1b0g|1b0g]], [[1b0r|1b0r]], [[1of2|1of2]], [[1hhi|1hhi]], [[1qse|1qse]], [[1a9b|1a9b]], [[2axg|2axg]], [[1agc|1agc]], [[2bvq|2bvq]], [[1hhj|1hhj]], [[1qvo|1qvo]], [[1s9w|1s9w]], [[1ktl|1ktl]], [[1a6z|1a6z]], [[2cik|2cik]], [[2uwe|2uwe]], [[1i1f|1i1f]], [[2av7|2av7]], [[2vlk|2vlk]], [[2vlm|2vlm]]</div></td></tr>
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[[Category: Ishizuka, J.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vll FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vll OCA], [http://pdbe.org/2vll PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vll RCSB], [http://www.ebi.ac.uk/pdbsum/2vll PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vll ProSAT]</span></td></tr>
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[[Category: Jones, Y.]]
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</table>
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[[Category: Mcmichael, A.]]
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== Function ==
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[[Category: Merwe, A.Van.Der.]]
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[[http://www.uniprot.org/uniprot/1A02_HUMAN 1A02_HUMAN]] Involved in the presentation of foreign antigens to the immune system.
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[[Category: Stewart-Jones, G.]]
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== Evolutionary Conservation ==
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[[Category: complex]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: disease mutation]]
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Check<jmol>
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[[Category: flu]]
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<jmolCheckbox>
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[[Category: glycation]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/2vll_consurf.spt"</scriptWhenChecked>
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[[Category: glycoprotein]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: host-virus interaction]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: immune response]]
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</jmolCheckbox>
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[[Category: immune system/receptor/complex]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vll ConSurf].
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[[Category: immunodominance]]
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<div style="clear:both"></div>
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[[Category: immunoglobulin domain]]
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<div style="background-color:#fffaf0;">
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[[Category: membrane]]
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== Publication Abstract from PubMed ==
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[[Category: mhc]]
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Immunodominant and public T cell receptor (TCR) usage is relatively common in many viral diseases yet surprising in the context of the large naive TCR repertoire. We examined the highly conserved Vbeta17:Valpha10.2 JM22 T cell response to the influenza matrix peptide (58-66)-HLA-A*0201 (HLA-A2-flu) through extensive kinetic, thermodynamic, and structural analyses. We found several conformational adjustments that accompany JM22-HLA-A2-flu binding and identified a binding "hotspot" within the Vbeta domain of the TCR. Within this hotspot, key germline-encoded CDR1 and CDR2 loop residues and a crucial but commonly coded residue in the hypervariable region of CDR3 provide the basis for the substantial bias in the selection of the germline-encoded Vbeta17 domain. The chances of having a substantial number of T cells in the naive repertoire that have HLA-A2-flu-specific Vbeta17 receptors may consequently be relatively high, thus explaining the immunodominant usage of this clonotype.
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[[Category: mhc i]]
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[[Category: peptide]]
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[[Category: polymorphism]]
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[[Category: pyrrolidone carboxylic acid]]
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[[Category: receptor]]
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[[Category: secreted]]
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[[Category: t-cell]]
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[[Category: tcr]]
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[[Category: transmembrane]]
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[[Category: ubl conjugation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 10:57:47 2008''
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The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vbeta domain.,Ishizuka J, Stewart-Jones GB, van der Merwe A, Bell JI, McMichael AJ, Jones EY Immunity. 2008 Feb;28(2):171-82. PMID:18275829<ref>PMID:18275829</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2vll" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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*[[MHC 3D structures|MHC 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Human]]
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[[Category: Large Structures]]
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[[Category: Bell, J]]
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[[Category: Ishizuka, J]]
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[[Category: Jones, Y]]
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[[Category: Mcmichael, A]]
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[[Category: Merwe, A Van Der]]
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[[Category: Stewart-Jones, G]]
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[[Category: Complex]]
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[[Category: Disease mutation]]
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[[Category: Flu]]
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[[Category: Glycation]]
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[[Category: Glycoprotein]]
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[[Category: Host-virus interaction]]
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[[Category: Immune response]]
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[[Category: Immune system]]
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[[Category: Immune system-receptor-complex]]
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[[Category: Immunodominance]]
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[[Category: Immunoglobulin domain]]
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[[Category: Membrane]]
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[[Category: Mhc]]
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[[Category: Mhc i]]
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[[Category: Polymorphism]]
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[[Category: Pyrrolidone carboxylic acid]]
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[[Category: Receptor]]
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[[Category: Secreted]]
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[[Category: T-cell]]
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[[Category: Tcr]]
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[[Category: Transmembrane]]
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[[Category: Ubl conjugation]]

Current revision

The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain

PDB ID 2vll

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