3bsd

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(New page: 200px<br /><applet load="3bsd" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bsd, resolution 2.30&Aring;" /> '''Light harvesting pro...)
Current revision (14:50, 1 November 2023) (edit) (undo)
 
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[[Image:3bsd.jpg|left|200px]]<br /><applet load="3bsd" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3bsd, resolution 2.30&Aring;" />
 
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'''Light harvesting protein from RC of Chlorobium tepidum'''<br />
 
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==About this Structure==
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==Light harvesting protein from RC of Chlorobium tepidum==
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3BSD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=BCL:'>BCL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BSD OCA].
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<StructureSection load='3bsd' size='340' side='right'caption='[[3bsd]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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[[Category: Chlorobaculum tepidum]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[3bsd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BSD FirstGlance]. <br>
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[[Category: Brn-Shem, A.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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[[Category: Frolow, F.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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[[Category: Nelson, N.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bsd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bsd OCA], [https://pdbe.org/3bsd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bsd RCSB], [https://www.ebi.ac.uk/pdbsum/3bsd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bsd ProSAT]</span></td></tr>
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[[Category: BCL]]
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</table>
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[[Category: MG]]
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== Function ==
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[[Category: bacteriochlorophyll]]
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[https://www.uniprot.org/uniprot/BCPA_CHLTE BCPA_CHLTE] Intermediary in the transfer of excitation energy from the chlorophyll to the reaction centers.
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[[Category: chlorophyll]]
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== Evolutionary Conservation ==
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[[Category: chromophore]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: electron transport]]
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Check<jmol>
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[[Category: green bacteria]]
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<jmolCheckbox>
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[[Category: light harvesting]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bs/3bsd_consurf.spt"</scriptWhenChecked>
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[[Category: magnesium]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: metal-binding]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: photosynthesis]]
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</jmolCheckbox>
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[[Category: reaction center]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bsd ConSurf].
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[[Category: transport]]
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The evolution of photosystem (PS) I was probably initiated by the formation of a homodimeric reaction center similar to the one currently present in green bacteria. Gene duplication has generated a heterodimeric reaction center that subsequently evolved to the PSI present in cyanobacteria, algae and plant chloroplasts. During the evolution of PSI several attempts to maximize the efficiency of light harvesting took place in the various organisms. In the Chlorobiaceae, chlorosomes and FMO were added to the homodimeric reaction center. In cyanobacteria phycobilisomes and CP43' evolved to cope with the light limitations and stress conditions. The plant PSI utilizes a modular arrangement of membrane light-harvesting proteins (LHCI). We obtained structural information from the two ends of the evolutionary spectrum. Novel features in the structure of Chlorobium tepidum FMO are reported in this communication. Our structure of plant PSI reveals that the addition of subunit G provided the template for LHCI binding, and the addition of subunit H prevented the possibility of trimer formation and provided a binding site for LHCII and the onset of energy spillover from PSII to PSI.
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:00:24 2008''
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Evolution of photosystem I - from symmetry through pseudo-symmetry to asymmetry.,Ben-Shem A, Frolow F, Nelson N FEBS Lett. 2004 Apr 30;564(3):274-80. PMID:15111109<ref>PMID:15111109</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3bsd" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Chlorobaculum tepidum]]
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[[Category: Large Structures]]
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[[Category: Brn-Shem A]]
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[[Category: Frolow F]]
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[[Category: Nelson N]]

Current revision

Light harvesting protein from RC of Chlorobium tepidum

PDB ID 3bsd

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