3p19

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(New page: '''Unreleased structure''' The entry 3p19 is ON HOLD Authors: Kao, T. H., Chen, Y., Pai, C. H., Wang, AHJ Description: Improved NADPH-dependent Blue Fluorescent Protein ''Page seeded ...)
Current revision (17:00, 1 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 3p19 is ON HOLD
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==Improved NADPH-dependent Blue Fluorescent Protein==
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<StructureSection load='3p19' size='340' side='right'caption='[[3p19]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3p19]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_vulnificus Vibrio vulnificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P19 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p19 OCA], [https://pdbe.org/3p19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p19 RCSB], [https://www.ebi.ac.uk/pdbsum/3p19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p19 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9F172_VIBVL Q9F172_VIBVL]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A NADPH-dependent blue fluorescent protein from Vibrio vulnificus CKM-1 (BFPvv) emits blue fluorescence under UV-exposure. Previously, the BFPvvD7 mutant generated by directed evolution displayed a fourfold enhancement in fluorescent intensity. Herein, a further increase in fluorescence in the new BFPvvD8 mutant, with three additional mutations from BFPvvD7, was made. To understand the underlying mechanism of the increased fluorescent intensity of BFPvv, we solved the BFPvvD8-NADPH complex structure. Accompanied with lifetime detection, we proposed that the enhanced intensity is related to the conformational change caused by a glycine residue (Gly176) mutated to other non-glycine residues at a turn close to the NADPH binding site. We also observed the Forster resonance energy transfer (FRET) from our BFPvvD8 to each of the GFP-like fluorescent proteins, mTFP1 and EGFP, joined by an eight-residue linker between the N-terminal of BFPvvD8 and the C-terminal of GFPs. Taken together, with the newly solved BFPvvD8 structure, our results not only provide new considerations within the rational-based protein engineering of this NADPH-dependent BFP, but also suggest that BFPvvD8 could be a potential candidate in FRET-based biosensor techniques.
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Authors: Kao, T. H., Chen, Y., Pai, C. H., Wang, AHJ
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Structure of a NADPH-dependent blue fluorescent protein revealed the unique role of Gly176 on the fluorescence enhancement.,Kao TH, Chen Y, Pai CH, Chang MC, Wang AH J Struct Biol. 2011 Jun;174(3):485-93. doi: 10.1016/j.jsb.2011.02.010., Epub 2011 Mar 21. PMID:21397029<ref>PMID:21397029</ref>
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Description: Improved NADPH-dependent Blue Fluorescent Protein
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 6 05:50:51 2010''
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<div class="pdbe-citations 3p19" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Vibrio vulnificus]]
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[[Category: Chen Y]]
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[[Category: Kao TH]]
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[[Category: Pai CH]]
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[[Category: Wang AHJ]]

Current revision

Improved NADPH-dependent Blue Fluorescent Protein

PDB ID 3p19

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