Sandbox Reserved 19

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(New page: <!-- PLEASE DO NOT DELETE THIS TEMPLATE --> {{BioCrys Sandbox}} | To get started: * Click the edit this page tab at the top. Save the page after each step, then edit it again. *...)
Current revision (09:42, 14 May 2013) (edit) (undo)
 
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<!-- PLEASE DO NOT DELETE THIS TEMPLATE -->
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{{BioCrys Sandbox}}
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{{Template:Sandbox Reserved Eric Martz}}
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| To get started:
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<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
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* Click the edit this page tab at the top. Save the page after each step, then edit it again.
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<Structure load='3i0a' size='400' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
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* Click the 3D button (when editing, above the wikitext box) to insert Jmol, similar to the one below.
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<scene name='Sandbox_Reserved_19/3i0a_charge/7'>Charged</scene>
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'''Cationic+''' atoms are colored blue.
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65+, including 25+ with incomplete sidechains.
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(21 Arg, 44 Lys) (6 His)
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You're missing out!
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'''Anionic-''' atoms are colored red.
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47-, including 12- with incomplete sidechains.
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(22 Asp, 24 Glu, 1 C terminus)
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You need Java to see the 3D molecule in this box. The 3D molecules are the most important part of Proteopedia.
 
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Install Java from www.java.com. It's free.
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<scene name='Sandbox_Reserved_19/Polar_hydrophobic/1'>Hydrophobic/Polar</scene>
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If you already have Java installed,
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The catalytic pocket is highly conserved, while conservation of the remainder of the surface is more variable. Conserved regions of unknown function deserve investigation because they are likely to have important functions.
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make sure Java applets are enabled
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in your web browser preferences
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Insert caption here
 
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* show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
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<scene name='Sandbox_Reserved_19/3i0a_evolutionary_conserved/1'>Evolutionary Conservation</scene>
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[[Image:Conserve.jpg]]
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Click here to see what can be achieved green link
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* Add a description of your scene.-Ex. " CotA laccase from Bacillus subtilis with two copper centers" -
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Use the buttons above the wikitext box for bold, italics, links, headlines, etc. More help: Help:Editing |} <!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
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Current revision

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Getting Started in Proteopedia, Help:Editing, Main Help Page.

Insert caption here

Drag the structure with the mouse to rotate

Cationic+ atoms are colored blue. 65+, including 25+ with incomplete sidechains. (21 Arg, 44 Lys) (6 His)

Anionic- atoms are colored red. 47-, including 12- with incomplete sidechains. (22 Asp, 24 Glu, 1 C terminus)


The catalytic pocket is highly conserved, while conservation of the remainder of the surface is more variable. Conserved regions of unknown function deserve investigation because they are likely to have important functions.


Image:Conserve.jpg

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