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3obr

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{{Seed}}
 
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[[Image:3obr.png|left|200px]]
 
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==Crystal structure of Botulinum neurotoxin serotype D binding domain==
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The line below this paragraph, containing "STRUCTURE_3obr", creates the "Structure Box" on the page.
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<StructureSection load='3obr' size='340' side='right' caption='[[3obr]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3obr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_botulinus"_van_ermengem_1896 "bacillus botulinus" van ermengem 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OBR FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3obt|3obt]]</td></tr>
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{{STRUCTURE_3obr| PDB=3obr | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">botD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1491 "Bacillus botulinus" van Ermengem 1896])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Bontoxilysin Bontoxilysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.69 3.4.24.69] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3obr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3obr OCA], [http://pdbe.org/3obr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3obr RCSB], [http://www.ebi.ac.uk/pdbsum/3obr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3obr ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/BXD_CLOBO BXD_CLOBO]] Botulinum toxin acts by inhibiting neurotransmitter release. It binds to peripheral neuronal synapses, is internalized and moves by retrograde transport up the axon into the spinal cord where it can move between postsynaptic and presynaptic neurons. It inhibits neurotransmitter release by acting as a zinc endopeptidase that cleaves the '60-Lys-|-Leu-61' bond of synaptobrevins-1 and -2.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/3obr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3obr ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The extraordinary high toxicity of botulinum neurotoxins primarily results from their specific binding and uptake into neurons. At motor neurons, the seven botulinum neurotoxin serotypes A-G (BoNT/A-G) inhibit acetylcholine release leading to flaccid paralysis. Uptake of BoNT/A, B, E, F and G requires a dual interaction with gangliosides and the synaptic vesicle proteins synaptotagmin or SV2, whereas little is known about the cell entry mechanisms of the serotypes C and D that display the lowest amino acid sequence identity compared to the other five serotypes. Here, we demonstrate that the neurotoxicity of BoNT/D depends on the presence of gangliosides by employing phrenic nerve hemidiaphragm preparations derived from mice expressing GM3, GM2, GM1 and GD1a or only GM3. High resolution crystal structures of the 50 kDa cell binding domain of BoNT/D alone and in complex with sialic acid as well as biological analyses of single site BoNT/D mutants identified two carbohydrate binding sites. One site is located at a position previously identified in BoNT/A, B, E, F and G but is lacking the conserved SXWY motif. The other site coordinating one molecule of sialic acid resembles the second ganglioside binding pocket of tetanus neurotoxin (TeNT), named the sialic acid pocket.
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===Crystal structure of Botulinum neurotoxin serotype D binding domain===
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Botulinum neurotoxin serotype D attacks neurons via two carbohydrate binding sites in a ganglioside dependent manner.,Strotmeier J, Lee K, Volker AK, Mahrhold S, Zong Y, Zeiser J, Zhou J, Pich A, Bigalke H, Binz T, Rummel A, Jin R Biochem J. 2010 Aug 12. PMID:20704566<ref>PMID:20704566</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3obr" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20704566}}, adds the Publication Abstract to the page
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*[[Botulinum neurotoxin|Botulinum neurotoxin]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20704566 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20704566}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Bacillus botulinus van ermengem 1896]]
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3OBR is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OBR OCA].
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==Reference==
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<ref group="xtra">PMID:20704566</ref><references group="xtra"/>
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[[Category: Bontoxilysin]]
[[Category: Bontoxilysin]]
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[[Category: Clostridium botulinum]]
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[[Category: Jin, R]]
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[[Category: Jin, R.]]
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[[Category: Lee, K K]]
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[[Category: Lee, K K.]]
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[[Category: Zong, Y]]
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[[Category: Zong, Y.]]
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[[Category: Ganglioside]]
[[Category: Ganglioside]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Ligand binding]]
[[Category: Ligand binding]]
[[Category: Snare]]
[[Category: Snare]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 13 10:12:16 2010''
 

Current revision

Crystal structure of Botulinum neurotoxin serotype D binding domain

3obr, resolution 1.72Å

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