This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2b4o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:15, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2b4o.png|left|200px]]
 
-
<!--
+
==Structure of the R258K mutant of Selenomonas ruminantium PTP-like phytase==
-
The line below this paragraph, containing "STRUCTURE_2b4o", creates the "Structure Box" on the page.
+
<StructureSection load='2b4o' size='340' side='right'caption='[[2b4o]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2b4o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Selenomonas_ruminantium Selenomonas ruminantium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B4O FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_2b4o| PDB=2b4o | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b4o OCA], [https://pdbe.org/2b4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b4o RCSB], [https://www.ebi.ac.uk/pdbsum/2b4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b4o ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7WUJ1_SELRU Q7WUJ1_SELRU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/2b4o_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b4o ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of the R258K mutant of Selenomonas ruminantium PTP-like phytase===
+
==See Also==
-
 
+
*[[Phytase 3D structures|Phytase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17567745}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 17567745 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_17567745}}
+
-
 
+
-
==About this Structure==
+
-
2B4O is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Selenomonas_ruminantium Selenomonas ruminantium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B4O OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:17567745</ref><references group="xtra"/>
+
-
[[Category: 5-phytase]]
+
[[Category: Selenomonas ruminantium]]
[[Category: Selenomonas ruminantium]]
-
[[Category: Gruninger, R J.]]
+
[[Category: Gruninger RJ]]
-
[[Category: Mosimann, S C.]]
+
[[Category: Mosimann SC]]
-
[[Category: Selinger, L B.]]
+
[[Category: Selinger LB]]
-
[[Category: Hydrolase]]
+
-
[[Category: Ionic strength]]
+
-
[[Category: Ptp-like]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 20 06:10:21 2010''
+

Current revision

Structure of the R258K mutant of Selenomonas ruminantium PTP-like phytase

PDB ID 2b4o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2b4o"
Personal tools