This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mca

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:31, 20 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mca.png|left|200px]]
 
-
<!--
+
==Structure of the Dom34-Hbs1 Complex and implications for its role in No-Go decay==
-
The line below this paragraph, containing "STRUCTURE_3mca", creates the "Structure Box" on the page.
+
<StructureSection load='3mca' size='340' side='right'caption='[[3mca]], [[Resolution|resolution]] 2.74&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mca]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MCA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.74&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mca OCA], [https://pdbe.org/3mca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mca RCSB], [https://www.ebi.ac.uk/pdbsum/3mca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mca ProSAT]</span></td></tr>
-
{{STRUCTURE_3mca| PDB=3mca | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Structure of the Dom34-Hbs1 Complex and implications for its role in No-Go decay===
+
[https://www.uniprot.org/uniprot/HBS1_SCHPO HBS1_SCHPO] Involved in protein translation. Together with dom34, may function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (By similarity).[UniProtKB:P32769]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20890290}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20890290 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mc/3mca_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_20890290}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mca ConSurf].
-
3MCA is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MCA OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:20890290</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Schizosaccharomyces pombe]]
[[Category: Schizosaccharomyces pombe]]
-
[[Category: Chen, L.]]
+
[[Category: Chen L]]
-
[[Category: Song, H.]]
+
[[Category: Song H]]
-
[[Category: No-go decay]]
+
-
[[Category: Protein protein complex]]
+
-
[[Category: Translation regulation]]
+
-
[[Category: Translation regulation-hydrolase complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 20 06:12:57 2010''
+

Current revision

Structure of the Dom34-Hbs1 Complex and implications for its role in No-Go decay

PDB ID 3mca

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools