2afb

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[[Image:2afb.gif|left|200px]]<br /><applet load="2afb" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2afb, resolution 2.050&Aring;" />
 
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'''Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution'''<br />
 
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==About this Structure==
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==Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution==
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2AFB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8] with <scene name='pdbligand=NI:'>NI</scene> and <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFB OCA].
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<StructureSection load='2afb' size='340' side='right'caption='[[2afb]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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== Structural highlights ==
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==Reference==
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<table><tr><td colspan='2'>[[2afb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1j5v 1j5v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFB FirstGlance]. <br>
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Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 A resolution., Mathews II, McMullan D, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Rife CL, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Weekes D, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2008 Feb 1;70(2):603-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18004772 18004772]
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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[[Category: Single protein]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afb OCA], [https://pdbe.org/2afb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afb RCSB], [https://www.ebi.ac.uk/pdbsum/2afb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afb ProSAT], [https://www.topsan.org/Proteins/JCSG/2afb TOPSAN]</span></td></tr>
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[[Category: Thermotoga maritima msb8]]
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</table>
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[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
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== Function ==
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[[Category: CA]]
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[https://www.uniprot.org/uniprot/Q9WXS2_THEMA Q9WXS2_THEMA]
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[[Category: NI]]
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== Evolutionary Conservation ==
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[[Category: 2-dehydro-3- deoxygluconokinase]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: jcsg]]
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Check<jmol>
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[[Category: joint center for structural genomics]]
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<jmolCheckbox>
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[[Category: pfkb family carbohydrate kinase]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afb_consurf.spt"</scriptWhenChecked>
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[[Category: protein structure initiative]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: psi]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: structural genomics]]
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</jmolCheckbox>
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[[Category: tm0067]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afb ConSurf].
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[[Category: transferase]]
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<div style="clear:both"></div>
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__TOC__
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:17:21 2008''
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Thermotoga maritima MSB8]]

Current revision

Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution

PDB ID 2afb

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