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3nic

From Proteopedia

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{{Seed}}
 
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[[Image:3nic.png|left|200px]]
 
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<!--
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==DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F==
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The line below this paragraph, containing "STRUCTURE_3nic", creates the "Structure Box" on the page.
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<StructureSection load='3nic' size='340' side='right'caption='[[3nic]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3nic]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NIC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NIC FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_3nic| PDB=3nic | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nic OCA], [https://pdbe.org/3nic PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nic RCSB], [https://www.ebi.ac.uk/pdbsum/3nic PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nic ProSAT]</span></td></tr>
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</table>
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===DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F===
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== Function ==
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[https://www.uniprot.org/uniprot/Q46944_ECOLX Q46944_ECOLX]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_20800503}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 20800503 is the PubMed ID number.
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<jmolCheckbox>
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-->
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ni/3nic_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_20800503}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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3NIC is a 16 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NIC OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nic ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:20800503</ref><ref group="xtra">PMID:1579502</ref><references group="xtra"/>
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Type II site-specific deoxyribonuclease]]
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[[Category: Large Structures]]
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[[Category: Lambert, A R.]]
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[[Category: Lambert AR]]
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[[Category: Mak, A N.S.]]
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[[Category: Mak ANS]]
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[[Category: Stoddard, B L.]]
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[[Category: Stoddard BL]]
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[[Category: Dna-bound]]
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[[Category: Giy-yig endonuclease]]
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[[Category: Hydrolase-dna complex]]
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[[Category: Type ii restriction endonuclease]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 27 11:25:56 2010''
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Current revision

DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F

PDB ID 3nic

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