2v2f

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(New page: 200px<br /><applet load="2v2f" size="350" color="white" frame="true" align="right" spinBox="true" caption="2v2f, resolution 1.90&Aring;" /> '''CRYSTAL STRUCTURE OF...)
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[[Image:2v2f.jpg|left|200px]]<br /><applet load="2v2f" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2v2f, resolution 1.90&Aring;" />
 
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'''CRYSTAL STRUCTURE OF PBP1A FROM DRUG-RESISTANT STRAIN 5204 FROM STREPTOCOCCUS PNEUMONIAE'''<br />
 
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==Overview==
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==Crystal structure of PBP1a from drug-resistant strain 5204 from Streptococcus pneumoniae==
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The development of high level beta-lactam resistance in the pneumococcus, requires the expression of an altered form of PBP1a, in addition to, modified forms of PBP2b and PBP2x, which are necessary for the appearance, of low levels of resistance. Here, we present the crystal structure of a, soluble form of PBP1a from the highly resistant S. pneumoniae strain 5204, (minimal inhibitory concentration of cefotaxime = 12 mg.L(-1)). Mutations, T371A, which is adjacent to the catalytic nuclophile Ser370, and, TSQF(574-577)NTGY, which lie in a loop bordering the active site cleft, were investigated by site-directed mutagenesis. The consequences of these, substitutions on reaction kinetics with beta-lactams were probed in vitro, and their effect on resistance were measured in vivo. The results are, interpreted in the framework of the crystal structure, which displays a, narrower, discontinuous active site cavity, compared to that of PBP1a from, the beta-lactam susceptible strain R6, as well as a reorientation of the, catalytic Ser370.
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<StructureSection load='2v2f' size='340' side='right'caption='[[2v2f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2v2f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V2F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V2F FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BA:BARIUM+ION'>BA</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v2f OCA], [https://pdbe.org/2v2f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v2f RCSB], [https://www.ebi.ac.uk/pdbsum/2v2f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v2f ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9RET4_STREE Q9RET4_STREE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v2/2v2f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v2f ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The development of high level beta-lactam resistance in the pneumococcus requires the expression of an altered form of PBP1a, in addition to modified forms of PBP2b and PBP2x, which are necessary for the appearance of low levels of resistance. Here, we present the crystal structure of a soluble form of PBP1a from the highly resistant Streptococcus pneumoniae strain 5204 (minimal inhibitory concentration of cefotaxime is 12 mg.liter(-1)). Mutations T371A, which is adjacent to the catalytic nucleophile Ser(370), and TSQF(574-577)NTGY, which lie in a loop bordering the active site cleft, were investigated by site-directed mutagenesis. The consequences of these substitutions on reaction kinetics with beta-lactams were probed in vitro, and their effect on resistance was measured in vivo. The results are interpreted in the framework of the crystal structure, which displays a narrower, discontinuous active site cavity, compared with that of PBP1a from the beta-lactam susceptible strain R6, as well as a reorientation of the catalytic Ser(370).
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==About this Structure==
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Common Alterations in PBP1a from Resistant Streptococcus pneumoniae Decrease Its Reactivity toward {beta}-Lactams: STRUCTURAL INSIGHTS.,Job V, Carapito R, Vernet T, Dessen A, Zapun A J Biol Chem. 2008 Feb 22;283(8):4886-4894. Epub 2007 Nov 30. PMID:18055459<ref>PMID:18055459</ref>
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2V2F is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae] with <scene name='pdbligand=BA:'>BA</scene> and <scene name='pdbligand=MES:'>MES</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Peptidoglycan_glycosyltransferase Peptidoglycan glycosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.129 2.4.1.129] Known structural/functional Sites: <scene name='pdbsite=AC1:Ba Binding Site For Chain F'>AC1</scene> and <scene name='pdbsite=AC2:Mes Binding Site For Chain F'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V2F OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Common alterations in PBP1a from resistant streptococcus pneumoniae decrease its reactivity towards beta -lactams: Structural insights., Job V, Carapito R, Vernet T, Dessen A, Zapun A, J Biol Chem. 2007 Nov 30;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18055459 18055459]
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</div>
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[[Category: Peptidoglycan glycosyltransferase]]
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<div class="pdbe-citations 2v2f" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Streptococcus pneumoniae]]
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[[Category: Carapito, R.]]
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[[Category: Dessen, A.]]
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[[Category: Dideberg, O.]]
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[[Category: Job, V.]]
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[[Category: Vernet, T.]]
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[[Category: Zapun, A.]]
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[[Category: BA]]
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[[Category: MES]]
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[[Category: hydrolase]]
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[[Category: peptidoglycan synthesis]]
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[[Category: transferase]]
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[[Category: transpeptidase activity]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:28:19 2008''
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==See Also==
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*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Streptococcus pneumoniae]]
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[[Category: Carapito R]]
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[[Category: Dessen A]]
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[[Category: Dideberg O]]
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[[Category: Job V]]
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[[Category: Vernet T]]
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[[Category: Zapun A]]

Current revision

Crystal structure of PBP1a from drug-resistant strain 5204 from Streptococcus pneumoniae

PDB ID 2v2f

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