We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

3pgd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 3pgd is ON HOLD Authors: Gunther, S., Schlundt, A., Sticht, J., Roske, Y., Heinemann, U., Wiesmuller, K.-H., Jung, G., Falk, K., Rotzschke, O., Freu...)
Current revision (02:16, 21 November 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3pgd is ON HOLD
+
==Crystal Structure of HLA-DR1 with CLIP106-120, canonical peptide orientation==
 +
<StructureSection load='3pgd' size='340' side='right'caption='[[3pgd]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3pgd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PGD FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pgd OCA], [https://pdbe.org/3pgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pgd RCSB], [https://www.ebi.ac.uk/pdbsum/3pgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pgd ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
T-cell recognition of peptides bound to MHC class II (MHCII) molecules is a central event in cell-mediated adaptive immunity. The current paradigm holds that prebound class II-associated invariant chain peptides (CLIP) and all subsequent antigens maintain a canonical orientation in the MHCII binding groove. Here we provide evidence for MHCII-bound CLIP inversion. NMR spectroscopy demonstrates that the interconversion from the canonical to the inverse alignment is a dynamic process, and X-ray crystallography shows that conserved MHC residues form a hydrogen bond network with the peptide backbone in both orientations. The natural catalyst HLA-DM accelerates peptide reorientation and the exchange of either canonically or inversely bound CLIP against antigenic peptide. Thus, noncanonical MHC-CLIP displays the hallmarks of a structurally and functionally intact antigen-presenting complex.
-
Authors: Gunther, S., Schlundt, A., Sticht, J., Roske, Y., Heinemann, U., Wiesmuller, K.-H., Jung, G., Falk, K., Rotzschke, O., Freund, C.
+
Bidirectional binding of invariant chain peptides to an MHC class II molecule.,Gunther S, Schlundt A, Sticht J, Roske Y, Heinemann U, Wiesmuller KH, Jung G, Falk K, Rotzschke O, Freund C Proc Natl Acad Sci U S A. 2010 Nov 29. PMID:21115828<ref>PMID:21115828</ref>
-
Description: Crystal Structure of HLA-DR1 with CLIP106-120, canonical peptide orientation
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3pgd" style="background-color:#fffaf0;"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 10 06:32:57 2010''
+
==See Also==
 +
*[[MHC 3D structures|MHC 3D structures]]
 +
*[[MHC II 3D structures|MHC II 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Falk K]]
 +
[[Category: Freund C]]
 +
[[Category: Gunther S]]
 +
[[Category: Heinemann U]]
 +
[[Category: Jung G]]
 +
[[Category: Roske Y]]
 +
[[Category: Rotzschke O]]
 +
[[Category: Schlundt A]]
 +
[[Category: Sticht J]]
 +
[[Category: Wiesmuller K-H]]

Current revision

Crystal Structure of HLA-DR1 with CLIP106-120, canonical peptide orientation

PDB ID 3pgd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools