3n9r

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{{Seed}}
 
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[[Image:3n9r.jpg|left|200px]]
 
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==Class II fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with N-(4-hydroxybutyl)-phosphoglycolohydroxamic acid, a competitive inhibitor==
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The line below this paragraph, containing "STRUCTURE_3n9r", creates the "Structure Box" on the page.
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<StructureSection load='3n9r' size='340' side='right'caption='[[3n9r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3n9r]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_51 Helicobacter pylori 51]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N9R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TD3:2-[HYDROXY(4-HYDROXYBUTYL)AMINO]-2-OXOETHYL+DIHYDROGEN+PHOSPHATE'>TD3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_3n9r| PDB=3n9r | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n9r OCA], [https://pdbe.org/3n9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n9r RCSB], [https://www.ebi.ac.uk/pdbsum/3n9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n9r ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/D0IR47_HELP1 D0IR47_HELP1]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We report the synthesis and biochemical evaluation of several selective inhibitors of class II (zinc dependent) fructose bis-phosphate aldolases (Fba). The products were designed as transition-state analogues of the catalyzed reaction, structurally related to the substrate fructose bis-phosphate (or sedoheptulose bis-phosphate) and based on an N-substituted hydroxamic acid, as a chelator of the zinc ion present in active site. The compounds synthesized were tested on class II Fbas from various pathogenic microorganisms and, by comparison, on a mammalian class I Fba. The best inhibitor shows K(i) against class II Fbas from various pathogens in the nM range, with very high selectivity (up to 10(5)). Structural analyses of inhibitors in complex with aldolases rationalize and corroborate the enzymatic kinetics results. These inhibitors represent lead compounds for the preparation of new synthetic antibiotics, notably for tuberculosis prophylaxis.
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===Class II fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with N-(4-hydroxybutyl)-phosphoglycolohydroxamic acid, a competitive inhibitor===
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Rational design, synthesis, and evaluation of new selective inhibitors of microbial class II (zinc dependent) fructose bis-phosphate aldolases.,Daher R, Coincon M, Fonvielle M, Gest PM, Guerin ME, Jackson M, Sygusch J, Therisod M J Med Chem. 2010 Nov 11;53(21):7836-42. PMID:20929256<ref>PMID:20929256</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3n9r" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20929256}}, adds the Publication Abstract to the page
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*[[Aldolase 3D structures|Aldolase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20929256 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20929256}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Helicobacter pylori 51]]
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3N9R is a 8 chains structure with sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N9R OCA].
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[[Category: Large Structures]]
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[[Category: Coincon M]]
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==Reference==
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[[Category: Sygusch S]]
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<ref group="xtra">PMID:20929256</ref><references group="xtra"/>
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[[Category: Fructose-bisphosphate aldolase]]
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[[Category: Helicobacter pylori]]
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[[Category: Coincon, M.]]
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[[Category: Sygusch, S.]]
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[[Category: Class ii]]
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[[Category: Fbp aldolase]]
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[[Category: Inhibitor]]
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[[Category: Lyase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 18 00:50:35 2010''
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Current revision

Class II fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with N-(4-hydroxybutyl)-phosphoglycolohydroxamic acid, a competitive inhibitor

PDB ID 3n9r

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