This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rg4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2rg4" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rg4, resolution 1.900&Aring;" /> '''Crystal structure o...)
Current revision (09:22, 21 February 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rg4.jpg|left|200px]]<br /><applet load="2rg4" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2rg4, resolution 1.900&Aring;" />
 
-
'''Crystal structure of the uncharacterized protein Q2CBJ1_9RHOB from Oceanicola granulosus HTCC2516'''<br />
 
-
==About this Structure==
+
==Crystal structure of the uncharacterized protein Q2CBJ1_9RHOB from Oceanicola granulosus HTCC2516==
-
2RG4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Oceanicola_granulosus_htcc2516 Oceanicola granulosus htcc2516] with <scene name='pdbligand=FE:'>FE</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RG4 OCA].
+
<StructureSection load='2rg4' size='340' side='right'caption='[[2rg4]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Oceanicola granulosus htcc2516]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2rg4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oceanicola_granulosus_HTCC2516 Oceanicola granulosus HTCC2516]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RG4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RG4 FirstGlance]. <br>
-
[[Category: Almo, S.C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
[[Category: Burley, S.K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
[[Category: Malashkevich, V.N.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rg4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rg4 OCA], [https://pdbe.org/2rg4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rg4 RCSB], [https://www.ebi.ac.uk/pdbsum/2rg4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rg4 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rg4 TOPSAN]</span></td></tr>
-
[[Category: Meyer, A.J.]]
+
</table>
-
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+
== Function ==
-
[[Category: Sauder, J.M.]]
+
[https://www.uniprot.org/uniprot/Q2CBJ1_OCEGH Q2CBJ1_OCEGH]
-
[[Category: Toro, R.]]
+
== Evolutionary Conservation ==
-
[[Category: FE]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: crystal structure]]
+
Check<jmol>
-
[[Category: new york structural genomix research consortium]]
+
<jmolCheckbox>
-
[[Category: nysgxrc]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rg/2rg4_consurf.spt"</scriptWhenChecked>
-
[[Category: oceanicola granulosus htcc2516]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi-2]]
+
</jmolCheckbox>
-
[[Category: q2cbj1_9rhob]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rg4 ConSurf].
-
[[Category: rhodobacterales]]
+
<div style="clear:both"></div>
-
[[Category: structural genomics]]
+
__TOC__
-
[[Category: unknown function]]
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:50:16 2008''
+
[[Category: Oceanicola granulosus HTCC2516]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Malashkevich VN]]
 +
[[Category: Meyer AJ]]
 +
[[Category: Sauder JM]]
 +
[[Category: Toro R]]

Current revision

Crystal structure of the uncharacterized protein Q2CBJ1_9RHOB from Oceanicola granulosus HTCC2516

PDB ID 2rg4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools