3o6h

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{{Seed}}
 
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[[Image:3o6h.png|left|200px]]
 
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==Ligand-binding domain of GluA2 (flip) ionotropic glutamate receptor in complex with an allosteric modulator==
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The line below this paragraph, containing "STRUCTURE_3o6h", creates the "Structure Box" on the page.
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<StructureSection load='3o6h' size='340' side='right'caption='[[3o6h]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3o6h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O6H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O6H FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene>, <scene name='pdbligand=O25:2-[({4-[(ETHYLAMINO)METHYL]-3-(TRIFLUOROMETHYL)-1H-PYRAZOL-1-YL}ACETYL)AMINO]-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-3-CARBOXAMIDE'>O25</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3o6h| PDB=3o6h | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o6h OCA], [https://pdbe.org/3o6h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o6h RCSB], [https://www.ebi.ac.uk/pdbsum/3o6h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o6h ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GRIA2_RAT GRIA2_RAT] Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.<ref>PMID:9351977</ref> <ref>PMID:19265014</ref> <ref>PMID:21172611</ref> <ref>PMID:12501192</ref> <ref>PMID:12015593</ref> <ref>PMID:12872125</ref> <ref>PMID:12730367</ref> <ref>PMID:16192394</ref> <ref>PMID:15591246</ref> <ref>PMID:17018279</ref> <ref>PMID:16483599</ref> <ref>PMID:19946266</ref> <ref>PMID:21317873</ref> <ref>PMID:21846932</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o6/3o6h_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3o6h ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Starting from lead compound 1, we demonstrate how X-ray structural data can be used to understand SAR and expediently optimize bioavailability in a novel series of AMPA receptor modulators, furnishing 5 with improved bioavailability and robust in vivo activity.
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===Ligand-binding domain of GluA2 (flip) ionotropic glutamate receptor in complex with an allosteric modulator===
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A novel series of positive modulators of the AMPA receptor: Structure-based lead optimization.,Jamieson C, Campbell RA, Cumming IA, Gillen KJ, Gillespie J, Kazemier B, Kiczun M, Lamont Y, Lyons AJ, Maclean JK, Martin F, Moir EM, Morrow JA, Pantling J, Rankovic Z, Smith L Bioorg Med Chem Lett. 2010 Aug 15. PMID:20817521<ref>PMID:20817521</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3o6h" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20817521}}, adds the Publication Abstract to the page
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*[[Glutamate receptor 3D structures|Glutamate receptor 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20817521 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20817521}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3O6H is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O6H OCA].
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==Reference==
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<ref group="xtra">PMID:20817521</ref><references group="xtra"/>
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[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
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[[Category: Campbell, R A.]]
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[[Category: Campbell RA]]
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[[Category: Cumming, I A.]]
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[[Category: Cumming IA]]
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[[Category: Gillen, K J.]]
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[[Category: Gillen KJ]]
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[[Category: Gillespie, J.]]
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[[Category: Gillespie J]]
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[[Category: Jamieson, C.]]
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[[Category: Jamieson C]]
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[[Category: Kazemier, B.]]
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[[Category: Kazemier B]]
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[[Category: Kiczun, M.]]
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[[Category: Kiczun M]]
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[[Category: Lamont, Y.]]
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[[Category: Lamont Y]]
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[[Category: Lyons, A J.]]
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[[Category: Lyons AJ]]
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[[Category: Maclean, J K.F.]]
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[[Category: Maclean JKF]]
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[[Category: Martin, F.]]
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[[Category: Martin F]]
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[[Category: Moir, E M.]]
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[[Category: Moir EM]]
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[[Category: Morrow, J A.]]
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[[Category: Morrow JA]]
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[[Category: Pantling, J.]]
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[[Category: Pantling J]]
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[[Category: Rankovic, Z.]]
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[[Category: Rankovic Z]]
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[[Category: Smith, L.]]
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[[Category: Smith L]]
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[[Category: Chimera protein]]
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[[Category: Fusion protein]]
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[[Category: Membrane protein]]
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[[Category: Transport protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 1 11:03:48 2010''
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Current revision

Ligand-binding domain of GluA2 (flip) ionotropic glutamate receptor in complex with an allosteric modulator

PDB ID 3o6h

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