This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bhg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3bhg" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bhg, resolution 1.90&Aring;" /> '''Crystal structure of...)
Current revision (10:41, 12 January 2022) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bhg.jpg|left|200px]]<br /><applet load="3bhg" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3bhg, resolution 1.90&Aring;" />
 
-
'''Crystal structure of adenylsuccinate lyase from Legionella pneumophila'''<br />
 
-
==About this Structure==
+
==Crystal structure of adenylosuccinate lyase from Legionella pneumophila==
-
3BHG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Adenylosuccinate_lyase Adenylosuccinate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.2.2 4.3.2.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BHG OCA].
+
<StructureSection load='3bhg' size='340' side='right'caption='[[3bhg]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Adenylosuccinate lyase]]
+
== Structural highlights ==
-
[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
+
<table><tr><td colspan='2'>[[3bhg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legph Legph]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BHG FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Chang, C.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Freeman, L.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lpg0801 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH])</td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Adenylosuccinate_lyase Adenylosuccinate lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.2.2 4.3.2.2] </span></td></tr>
-
[[Category: Li, H.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bhg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bhg OCA], [https://pdbe.org/3bhg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bhg RCSB], [https://www.ebi.ac.uk/pdbsum/3bhg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bhg ProSAT], [https://www.topsan.org/Proteins/MCSG/3bhg TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
</table>
-
[[Category: GOL]]
+
== Evolutionary Conservation ==
-
[[Category: SO4]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: adenylsuccinate lyase]]
+
Check<jmol>
-
[[Category: legionella pneumophila]]
+
<jmolCheckbox>
-
[[Category: mcsg]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bh/3bhg_consurf.spt"</scriptWhenChecked>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi-2]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bhg ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:55:35 2008''
+
==See Also==
 +
*[[Adenylosuccinate lyase 3D structures|Adenylosuccinate lyase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Adenylosuccinate lyase]]
 +
[[Category: Large Structures]]
 +
[[Category: Legph]]
 +
[[Category: Chang, C]]
 +
[[Category: Freeman, L]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Li, H]]
 +
[[Category: Structural genomic]]
 +
[[Category: Legionella pneumophila]]
 +
[[Category: Lyase]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]

Current revision

Crystal structure of adenylosuccinate lyase from Legionella pneumophila

PDB ID 3bhg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools