This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3bdr
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="3bdr" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bdr, resolution 2.80Å" /> '''Crystal structure of...) |
|||
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3bdr.gif|left|200px]]<br /><applet load="3bdr" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="3bdr, resolution 2.80Å" /> | ||
| - | '''Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.'''<br /> | ||
| - | == | + | ==Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.== |
| - | + | <StructureSection load='3bdr' size='340' side='right'caption='[[3bdr]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[3bdr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDR FirstGlance]. <br> |
| - | [[Category: Acton, T | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | [[Category: Baran, M | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Cunningham, K | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ycf58, tll1699 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32046 PCC 6301])</td></tr> |
| - | [[Category: Forouhar, F | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdr OCA], [https://pdbe.org/3bdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdr RCSB], [https://www.ebi.ac.uk/pdbsum/3bdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdr ProSAT], [https://www.topsan.org/Proteins/NESGC/3bdr TOPSAN]</span></td></tr> |
| - | [[Category: Hunt, J | + | </table> |
| - | [[Category: Janjua, H | + | == Function == |
| - | [[Category: Kuzin, A | + | [[https://www.uniprot.org/uniprot/CPXS_THEEB CPXS_THEEB]] Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (By similarity). |
| - | [[Category: Liu, J | + | == Evolutionary Conservation == |
| - | [[Category: Ma, L | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Montelione, G | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: Rost, B | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdr_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Seetharaman, J | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Su, M | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Tong, L | + | </jmolCheckbox> |
| - | [[Category: Wang, D | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bdr ConSurf]. |
| - | [[Category: Xiao, R | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Pcc 6301]] | |
| - | [[Category: | + | [[Category: Acton, T B]] |
| - | [[Category: | + | [[Category: Baran, M C]] |
| - | + | [[Category: Cunningham, K]] | |
| - | + | [[Category: Forouhar, F]] | |
| - | [[Category: | + | [[Category: Hunt, J F]] |
| - | + | [[Category: Janjua, H]] | |
| - | + | [[Category: Kuzin, A P]] | |
| - | + | [[Category: Liu, J]] | |
| + | [[Category: Ma, L C]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Su, M]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Wang, D]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Q8di91]] | ||
| + | [[Category: Unknown function]] | ||
| + | [[Category: Ycf58]] | ||
Current revision
Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.
| |||||||||||
Categories: Large Structures | Pcc 6301 | Acton, T B | Baran, M C | Cunningham, K | Forouhar, F | Hunt, J F | Janjua, H | Kuzin, A P | Liu, J | Ma, L C | Montelione, G T | Structural genomic | Rost, B | Seetharaman, J | Su, M | Tong, L | Wang, D | Xiao, R | Nesg | PSI, Protein structure initiative | Q8di91 | Unknown function | Ycf58
