2ree

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(New page: 200px<br /><applet load="2ree" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ree, resolution 1.950&Aring;" /> '''Crystal structure o...)
Current revision (09:21, 21 February 2024) (edit) (undo)
 
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[[Image:2ree.jpg|left|200px]]<br /><applet load="2ree" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ree, resolution 1.950&Aring;" />
 
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'''Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula'''<br />
 
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==Overview==
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==Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula==
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An unexpected biochemical strategy for chain initiation is described for, the loading module of the polyketide synthase of curacin A, an anticancer, lead derived from the marine cyanobacterium Lyngbya majuscula. A central, GCN5-related N-acetyltransferase (GNAT) domain bears bifunctional, decarboxylase/S-acetyltransferase activity, both unprecedented for the, GNAT superfamily. A CurA loading tridomain, consisting of an adaptor, domain, the GNAT domain, and an acyl carrier protein, was assessed, biochemically, revealing that a domain showing homology to GNAT (GNAT(L)), catalyzes (i) decarboxylation of malonyl-coenzyme A (malonyl-CoA) to, acetyl-CoA and (ii) direct S-acetyl transfer from acetyl-CoA to load an, adjacent acyl carrier protein domain (ACP(L)). Moreover, the N-terminal, adapter domain was shown to facilitate acetyl-group transfer. Crystal, structures of GNAT(L) were solved at 1.95 angstroms (ligand-free form) and, 2.75 angstroms (acyl-CoA complex), showing distinct substrate tunnels for, acyl-CoA and holo-ACP(L) binding. Modeling and site-directed mutagenesis, experiments demonstrated that histidine-389 and threonine-355, at the, convergence of the CoA and ACP tunnels, participate in malonyl-CoA, decarboxylation but not in acetyl-group transfer. Decarboxylation precedes, acetyl-group transfer, leading to acetyl-ACP(L) as the key curacin A, starter unit.
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<StructureSection load='2ree' size='340' side='right'caption='[[2ree]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[2ree]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Moorena_producens_19L Moorena producens 19L]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2REE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2REE FirstGlance]. <br>
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2REE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lyngbya_majuscula Lyngbya majuscula] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2REE OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ree FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ree OCA], [https://pdbe.org/2ree PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ree RCSB], [https://www.ebi.ac.uk/pdbsum/2ree PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ree ProSAT]</span></td></tr>
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GNAT-like strategy for polyketide chain initiation., Gu L, Geders TW, Wang B, Gerwick WH, Hakansson K, Smith JL, Sherman DH, Science. 2007 Nov 9;318(5852):970-4. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17991863 17991863]
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</table>
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[[Category: Lyngbya majuscula]]
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== Function ==
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[[Category: Single protein]]
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[https://www.uniprot.org/uniprot/Q6DNF2_9CYAN Q6DNF2_9CYAN]
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[[Category: Geders, T.W.]]
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== Evolutionary Conservation ==
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[[Category: Smith, J.L.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: CL]]
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Check<jmol>
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[[Category: GOL]]
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<jmolCheckbox>
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[[Category: SO4]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/re/2ree_consurf.spt"</scriptWhenChecked>
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[[Category: curacin]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: decarboxylase]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: gnat]]
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</jmolCheckbox>
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[[Category: loading]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ree ConSurf].
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[[Category: lyase]]
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<div style="clear:both"></div>
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[[Category: phosphopantetheine]]
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__TOC__
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[[Category: polyketide synthase]]
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</StructureSection>
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[[Category: s-acetyltransferase]]
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[[Category: Large Structures]]
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[[Category: transferase]]
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[[Category: Moorena producens 19L]]
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[[Category: Geders TW]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:10:37 2008''
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[[Category: Smith JL]]

Current revision

Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula

PDB ID 2ree

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