3l9e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3l9e" [edit=sysop:move=sysop])
Current revision (05:57, 17 October 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3l9e.png|left|200px]]
 
-
<!--
+
==Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis==
-
The line below this paragraph, containing "STRUCTURE_3l9e", creates the "Structure Box" on the page.
+
<StructureSection load='3l9e' size='340' side='right'caption='[[3l9e]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3l9e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L9E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3l9e| PDB=3l9e | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9e OCA], [https://pdbe.org/3l9e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l9e RCSB], [https://www.ebi.ac.uk/pdbsum/3l9e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l9e ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SODC_BOMMO SODC_BOMMO] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[UniProtKB:P00441]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[3l9e]] is a 4 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9E OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l9/3l9e_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l9e ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Superoxide Dismutase]]
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:20310068</ref><references group="xtra"/>
+
[[Category: Bombyx mori]]
[[Category: Bombyx mori]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Large Structures]]
-
[[Category: Chen, Y.]]
+
[[Category: Chen Y]]
-
[[Category: He, Y X.]]
+
[[Category: He Y-X]]
-
[[Category: Li, W F.]]
+
[[Category: Li W-F]]
-
[[Category: Teng, Y B.]]
+
[[Category: Teng Y-B]]
-
[[Category: Yan, L F.]]
+
[[Category: Yan L-F]]
-
[[Category: Yu, J.]]
+
[[Category: Yu J]]
-
[[Category: Zhang, G Z.]]
+
[[Category: Zhang G-Z]]
-
[[Category: Zhang, N N.]]
+
[[Category: Zhang N-N]]
-
[[Category: Zhao, F.]]
+
[[Category: Zhao F]]
-
[[Category: Zhou, C Z.]]
+
[[Category: Zhou C-Z]]
-
[[Category: Antioxidant]]
+
-
[[Category: Cytoplasm]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Greek-key-barrel]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Zinc]]
+

Current revision

Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis

PDB ID 3l9e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools