2ahz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:24, 23 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ahz.png|left|200px]]
 
-
<!--
+
==K+ complex of the NaK Channel==
-
The line below this paragraph, containing "STRUCTURE_2ahz", creates the "Structure Box" on the page.
+
<StructureSection load='2ahz' size='340' side='right'caption='[[2ahz]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ahz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AHZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-
{{STRUCTURE_2ahz| PDB=2ahz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ahz OCA], [https://pdbe.org/2ahz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ahz RCSB], [https://www.ebi.ac.uk/pdbsum/2ahz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ahz ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q81HW2_BACCR Q81HW2_BACCR]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ah/2ahz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ahz ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Ion selectivity is one of the basic properties that define an ion channel. Most tetrameric cation channels, which include the K+, Ca2+, Na+ and cyclic nucleotide-gated channels, probably share a similar overall architecture in their ion-conduction pore, but the structural details that determine ion selection are different. Although K+ channel selectivity has been well studied from a structural perspective, little is known about the structure of other cation channels. Here we present crystal structures of the NaK channel from Bacillus cereus, a non-selective tetrameric cation channel, in its Na+- and K+-bound states at 2.4 A and 2.8 A resolution, respectively. The NaK channel shares high sequence homology and a similar overall structure with the bacterial KcsA K+ channel, but its selectivity filter adopts a different architecture. Unlike a K+ channel selectivity filter, which contains four equivalent K+-binding sites, the selectivity filter of the NaK channel preserves the two cation-binding sites equivalent to sites 3 and 4 of a K+ channel, whereas the region corresponding to sites 1 and 2 of a K+ channel becomes a vestibule in which ions can diffuse but not bind specifically. Functional analysis using an 86Rb flux assay shows that the NaK channel can conduct both Na+ and K+ ions. We conclude that the sequence of the NaK selectivity filter resembles that of a cyclic nucleotide-gated channel and its structure may represent that of a cyclic nucleotide-gated channel pore.
-
===K+ complex of the NaK Channel===
+
Atomic structure of a Na+- and K+-conducting channel.,Shi N, Ye S, Alam A, Chen L, Jiang Y Nature. 2006 Mar 23;440(7083):570-4. Epub 2006 Feb 8. PMID:16467789<ref>PMID:16467789</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16467789}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2ahz" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16467789 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_16467789}}
+
-
 
+
-
==About this Structure==
+
-
[[2ahz]] is a 2 chain structure of [[Ion channels (Part II)]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AHZ OCA].
+
==See Also==
==See Also==
-
*[[Ion channels (Part II)]]
+
*[[Potassium channel 3D structures|Potassium channel 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:16467789</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Bacillus cereus]]
[[Category: Bacillus cereus]]
-
[[Category: Alam, A.]]
+
[[Category: Large Structures]]
-
[[Category: Chen, L.]]
+
[[Category: Alam A]]
-
[[Category: Jiang, Y.]]
+
[[Category: Chen L]]
-
[[Category: Shi, N.]]
+
[[Category: Jiang Y]]
-
[[Category: Ye, S.]]
+
[[Category: Shi N]]
-
[[Category: Central cavity]]
+
[[Category: Ye S]]
-
[[Category: Helix bundle]]
+
-
[[Category: Inverted teepee]]
+
-
[[Category: Ion binding]]
+
-
[[Category: Tetramer]]
+
-
[[Category: Transport protein]]
+

Current revision

K+ complex of the NaK Channel

PDB ID 2ahz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools