3dob

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3dob" [edit=sysop:move=sysop])
Current revision (12:50, 30 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3dob.png|left|200px]]
 
-
<!--
+
==Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.==
-
The line below this paragraph, containing "STRUCTURE_3dob", creates the "Structure Box" on the page.
+
<StructureSection load='3dob' size='340' side='right'caption='[[3dob]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dob]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DOB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene></td></tr>
-
{{STRUCTURE_3dob| PDB=3dob | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dob OCA], [https://pdbe.org/3dob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dob RCSB], [https://www.ebi.ac.uk/pdbsum/3dob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dob ProSAT], [https://www.topsan.org/Proteins/MCSG/3dob TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
[[3dob]] is a 2 chain structure of [[Heat Shock Proteins]] with sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOB OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/3dob_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dob ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Heat Shock Proteins]]
+
*[[Heat Shock Protein structures|Heat Shock Protein structures]]
 +
__TOC__
 +
</StructureSection>
[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
-
[[Category: Gu, M.]]
+
[[Category: Large Structures]]
-
[[Category: Hatzos, C.]]
+
[[Category: Gu M]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Hatzos C]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Joachimiak A]]
-
[[Category: Morimoto, R I.]]
+
[[Category: Morimoto RI]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Osipiuk J]]
-
[[Category: Voisine, C.]]
+
[[Category: Voisine C]]
-
[[Category: Zhang, R.]]
+
[[Category: Zhang R]]
-
[[Category: Apc90015 11]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Hsp70]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Peptide-binding domain]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.

PDB ID 3dob

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools