This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d7n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 2 February 2022) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3d7n.png|left|200px]]
 
-
<!--
+
==The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens==
-
The line below this paragraph, containing "STRUCTURE_3d7n", creates the "Structure Box" on the page.
+
<StructureSection load='3d7n' size='340' side='right'caption='[[3d7n]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3d7n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D7N FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGR_L_1309, Atu4201 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
-
{{STRUCTURE_3d7n| PDB=3d7n | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d7n OCA], [https://pdbe.org/3d7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d7n RCSB], [https://www.ebi.ac.uk/pdbsum/3d7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d7n ProSAT], [https://www.topsan.org/Proteins/MCSG/3d7n TOPSAN]</span></td></tr>
-
 
+
</table>
-
===The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
[[3d7n]] is a 1 chain structure of [[Flavodoxin]] with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D7N OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/3d7n_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d7n ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Flavodoxin]]
+
*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
__TOC__
-
[[Category: Edwards, A.]]
+
</StructureSection>
-
[[Category: Gu, J.]]
+
[[Category: Agrfc]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Large Structures]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Edwards, A]]
-
[[Category: Savchenko, A.]]
+
[[Category: Gu, J]]
-
[[Category: Xu, X.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Zhang, R.]]
+
[[Category: Structural genomic]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Xu, X]]
 +
[[Category: Zhang, R]]
[[Category: Electron transport]]
[[Category: Electron transport]]
[[Category: Flavodoxin]]
[[Category: Flavodoxin]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
[[Category: Wrba-like protein]]
[[Category: Wrba-like protein]]

Current revision

The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens

PDB ID 3d7n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools