1n8r

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[[Image:1n8r.png|left|200px]]
 
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==Structure of large ribosomal subunit in complex with virginiamycin M==
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The line below this paragraph, containing "STRUCTURE_1n8r", creates the "Structure Box" on the page.
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<StructureSection load='1n8r' size='340' side='right'caption='[[1n8r]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1n8r]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N8R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=VIR:VIRGINIAMYCIN+M1'>VIR</scene></td></tr>
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{{STRUCTURE_1n8r| PDB=1n8r | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n8r OCA], [https://pdbe.org/1n8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n8r RCSB], [https://www.ebi.ac.uk/pdbsum/1n8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n8r ProSAT]</span></td></tr>
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</table>
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===Structure of large ribosomal subunit in complex with virginiamycin M===
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== Function ==
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[https://www.uniprot.org/uniprot/RL2_HALMA RL2_HALMA] One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (By similarity).[HAMAP-Rule:MF_01320_A]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 12860128 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n8/1n8r_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_12860128}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[1n8r]] is a 30 chain structure of [[Ribosomal protein L10]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L5]], [[Ribosomal protein L6]] and [[Ribosomal protein L7]] with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N8R OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n8r ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[Ribosomal protein L10]]
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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*[[Ribosomal protein L2]]
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__TOC__
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*[[Ribosomal protein L3]]
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</StructureSection>
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*[[Ribosomal protein L5]]
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*[[Ribosomal protein L6]]
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*[[Ribosomal protein L7]]
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==Reference==
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<ref group="xtra">PMID:12860128</ref><references group="xtra"/>
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[[Category: Haloarcula marismortui]]
[[Category: Haloarcula marismortui]]
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[[Category: Hansen, J L.]]
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[[Category: Large Structures]]
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[[Category: Moore, P B.]]
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[[Category: Hansen JL]]
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[[Category: Steitz, T A.]]
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[[Category: Moore PB]]
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[[Category: Antibiotic]]
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[[Category: Steitz TA]]
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[[Category: Ribosome]]
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[[Category: Streptogramin]]
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[[Category: Virginiamycin m]]
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Current revision

Structure of large ribosomal subunit in complex with virginiamycin M

PDB ID 1n8r

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