This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1m9e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1m9e" [edit=sysop:move=sysop])
Current revision (07:41, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1m9e.png|left|200px]]
 
-
<!--
+
==X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) M-type H87A Complex.==
-
The line below this paragraph, containing "STRUCTURE_1m9e", creates the "Structure Box" on the page.
+
<StructureSection load='1m9e' size='340' side='right'caption='[[1m9e]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1m9e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M9E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M9E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m9e OCA], [https://pdbe.org/1m9e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m9e RCSB], [https://www.ebi.ac.uk/pdbsum/1m9e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m9e ProSAT]</span></td></tr>
-
{{STRUCTURE_1m9e| PDB=1m9e | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) M-type H87A Complex.===
+
[https://www.uniprot.org/uniprot/PPIA_HUMAN PPIA_HUMAN] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12730686}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12730686 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/1m9e_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_12730686}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m9e ConSurf].
-
[[1m9e]] is a 4 chain structure of [[Cyclophilin]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M9E OCA].
+
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cyclophilin]]
+
*[[Cyclophilin 3D structures|Cyclophilin 3D structures]]
-
 
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:12730686</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Human immunodeficiency virus 1]]
[[Category: Human immunodeficiency virus 1]]
-
[[Category: Peptidylprolyl isomerase]]
+
[[Category: Large Structures]]
-
[[Category: Hill, C P.]]
+
[[Category: Hill CP]]
-
[[Category: Howard, B R.]]
+
[[Category: Howard BR]]
-
[[Category: Li, S.]]
+
[[Category: Li S]]
-
[[Category: Sundquist, W I.]]
+
[[Category: Sundquist WI]]
-
[[Category: Vajdos, F F.]]
+
[[Category: Vajdos FF]]
-
[[Category: Capsid]]
+
-
[[Category: Cyclophilin some]]
+
-
[[Category: Hiv-1]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Isomerase/viral protein complex]]
+
-
[[Category: Rotamase]]
+

Current revision

X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) M-type H87A Complex.

PDB ID 1m9e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1m9e"
Personal tools