3cf0

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[[Image:3cf0.png|left|200px]]
 
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==Structure of D2 subdomain of P97/VCP in complex with ADP==
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The line below this paragraph, containing "STRUCTURE_3cf0", creates the "Structure Box" on the page.
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<StructureSection load='3cf0' size='340' side='right'caption='[[3cf0]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3cf0]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CF0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CF0 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
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{{STRUCTURE_3cf0| PDB=3cf0 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cf0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cf0 OCA], [https://pdbe.org/3cf0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cf0 RCSB], [https://www.ebi.ac.uk/pdbsum/3cf0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cf0 ProSAT]</span></td></tr>
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</table>
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===Structure of D2 subdomain of P97/VCP in complex with ADP===
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== Function ==
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[https://www.uniprot.org/uniprot/TERA_MOUSE TERA_MOUSE] Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. Regulates E3 ubiquitin-protein ligase activity of RNF19A (By similarity). Component of the VCP/p97-AMFR/gp78 complex that participates in the final step of the sterol-mediated ubiquitination and endoplasmic reticulum-associated degradation (ERAD) of HMGCR. Also involved in DNA damage response: recruited to double-strand breaks (DSBs) sites in a RNF8- and RNF168-dependent manner and promotes the recruitment of TP53BP1 at DNA damage sites. Recruited to stalled replication forks by SPRTN: may act by mediating extraction of DNA polymerase eta (POLH) to prevent excessive translesion DNA synthesis and limit the incidence of mutations induced by DNA damage (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_18462676}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 18462676 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/3cf0_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_18462676}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[3cf0]] is a 14 chain structure of [[ATPase]] with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CF0 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cf0 ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[ATPase]]
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*[[ATPase 3D structures|ATPase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:18462676</ref><references group="xtra"/>
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Brunger, A T.]]
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[[Category: Brunger AT]]
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[[Category: Davies, J M.]]
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[[Category: Davies JM]]
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[[Category: Weis, W I.]]
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[[Category: Weis WI]]
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[[Category: Aaa]]
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[[Category: Acetylation]]
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[[Category: Atp-binding]]
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[[Category: Cdc48]]
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[[Category: Cytoplasm]]
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[[Category: Erad]]
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[[Category: Lipid-binding]]
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[[Category: Nucleotide-binding]]
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[[Category: Nucleus]]
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[[Category: P97/vcp]]
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[[Category: Phosphoprotein]]
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[[Category: Transport]]
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[[Category: Transport protein]]
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[[Category: Ubl conjugation pathway]]
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Current revision

Structure of D2 subdomain of P97/VCP in complex with ADP

PDB ID 3cf0

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