This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ory

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:53, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ory.png|left|200px]]
 
-
<!--
+
==Crystal structure of M37 lipase==
-
The line below this paragraph, containing "STRUCTURE_2ory", creates the "Structure Box" on the page.
+
<StructureSection load='2ory' size='340' side='right'caption='[[2ory]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ory]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Photobacterium_sp._M37 Photobacterium sp. M37]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ORY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ORY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ory FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ory OCA], [https://pdbe.org/2ory PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ory RCSB], [https://www.ebi.ac.uk/pdbsum/2ory PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ory ProSAT]</span></td></tr>
-
{{STRUCTURE_2ory| PDB=2ory | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of M37 lipase===
+
[https://www.uniprot.org/uniprot/Q5DRN8_9GAMM Q5DRN8_9GAMM]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18186467}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18186467 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/or/2ory_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_18186467}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ory ConSurf].
-
[[2ory]] is a 2 chain structure of [[Lipase]] with sequence from [http://en.wikipedia.org/wiki/Photobacterium_sp._m37 Photobacterium sp. m37]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ORY OCA].
+
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Lipase]]
+
*[[Lipase 3D Structures|Lipase 3D Structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:18186467</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Photobacterium sp. m37]]
+
[[Category: Photobacterium sp. M37]]
-
[[Category: Triacylglycerol lipase]]
+
[[Category: Jeong DG]]
-
[[Category: Jeong, D G.]]
+
[[Category: Jung SK]]
-
[[Category: Jung, S K.]]
+
[[Category: Kim SJ]]
-
[[Category: Kim, S J.]]
+
-
[[Category: Alpha/beta hydrolase]]
+

Current revision

Crystal structure of M37 lipase

PDB ID 2ory

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ory"
Personal tools