We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.
2yzk
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2yzk" size="350" color="white" frame="true" align="right" spinBox="true" caption="2yzk, resolution 1.80Å" /> '''Crystal structure of...) |
|||
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2yzk.jpg|left|200px]]<br /><applet load="2yzk" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2yzk, resolution 1.80Å" /> | ||
| - | '''Crystal structure of orotate phosphoribosyltransferase from Aeropyrum pernix'''<br /> | ||
| - | == | + | ==Crystal structure of orotate phosphoribosyltransferase from Aeropyrum pernix== |
| - | + | <StructureSection load='2yzk' size='340' side='right'caption='[[2yzk]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[2yzk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZK FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzk OCA], [https://pdbe.org/2yzk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzk RCSB], [https://www.ebi.ac.uk/pdbsum/2yzk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzk ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzk TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | + | == Evolutionary Conservation == | |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzk_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |
| - | [[ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | + | </jmolCheckbox> | |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzk ConSurf]. | |
| - | + | <div style="clear:both"></div> | |
| - | + | ||
| - | [ | + | |
| - | [[ | + | |
| - | + | ||
| - | + | ||
| - | + | ==See Also== | |
| + | *[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Aeropyrum pernix]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Baba S]] | ||
| + | [[Category: Kanagawa M]] | ||
| + | [[Category: Kawai G]] | ||
| + | [[Category: Kuramitsu S]] | ||
| + | [[Category: Sampei G]] | ||
| + | [[Category: Yokoyama S]] | ||
Current revision
Crystal structure of orotate phosphoribosyltransferase from Aeropyrum pernix
| |||||||||||
