This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y4s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:54, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y4s.png|left|200px]]
 
-
<!--
+
==Conformation rearrangement of heat shock protein 90 upon ADP binding==
-
The line below this paragraph, containing "STRUCTURE_1y4s", creates the "Structure Box" on the page.
+
<StructureSection load='1y4s' size='340' side='right'caption='[[1y4s]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1y4s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y4S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y4S FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1y4s| PDB=1y4s | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y4s OCA], [https://pdbe.org/1y4s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y4s RCSB], [https://www.ebi.ac.uk/pdbsum/1y4s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y4s ProSAT]</span></td></tr>
-
 
+
</table>
-
===Conformation rearrangement of heat shock protein 90 upon ADP binding===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/HTPG_ECOLI HTPG_ECOLI] Molecular chaperone. Has ATPase activity.[HAMAP-Rule:MF_00505]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15837196}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15837196 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y4/1y4s_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15837196}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1y4s]] is a 2 chain structure of [[Heat Shock Proteins]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y4S OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y4s ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Heat Shock Proteins]]
+
*[[Heat Shock Protein structures|Heat Shock Protein structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:15837196</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Huai, Q.]]
+
[[Category: Large Structures]]
-
[[Category: Ke, H.]]
+
[[Category: Huai Q]]
-
[[Category: Kim, H.]]
+
[[Category: Ke H]]
-
[[Category: Liu, Y.]]
+
[[Category: Kim H]]
-
[[Category: Toft, D.]]
+
[[Category: Liu Y]]
-
[[Category: Wang, H.]]
+
[[Category: Toft D]]
-
[[Category: Atpase]]
+
[[Category: Wang H]]
-
[[Category: Hsp90]]
+
-
[[Category: Htpg]]
+
-
[[Category: Molecular chaperone]]
+

Current revision

Conformation rearrangement of heat shock protein 90 upon ADP binding

PDB ID 1y4s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y4s"
Personal tools