This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vpl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1vpl" [edit=sysop:move=sysop])
Current revision (06:40, 23 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vpl.png|left|200px]]
 
-
<!--
+
==Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution==
-
The line below this paragraph, containing "STRUCTURE_1vpl", creates the "Structure Box" on the page.
+
<StructureSection load='1vpl' size='340' side='right'caption='[[1vpl]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1vpl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VPL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1vpl| PDB=1vpl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vpl OCA], [https://pdbe.org/1vpl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vpl RCSB], [https://www.ebi.ac.uk/pdbsum/1vpl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vpl ProSAT], [https://www.topsan.org/Proteins/JCSG/1vpl TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9WZ14_THEMA Q9WZ14_THEMA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[1vpl]] is a 1 chain structure of [[ABC transporter]] with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VPL OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vp/1vpl_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vpl ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[ABC transporter]]
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
[[Category: Thermotoga maritima msb8]]
+
__TOC__
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Abc transporter atp-binding protein]]
+
[[Category: Large Structures]]
-
[[Category: Jcsg]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Joint center for structural genomic]]
+
-
[[Category: Lyase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tm0544]]
+

Current revision

Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution

PDB ID 1vpl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1vpl"
Personal tools