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2oym
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2oym" size="350" color="white" frame="true" align="right" spinBox="true" caption="2oym, resolution 1.860Å" /> '''Endo-glycoceramidas...) |
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| - | [[Image:2oym.jpg|left|200px]]<br /><applet load="2oym" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2oym, resolution 1.860Å" /> | ||
| - | '''Endo-glycoceramidase II from Rhodococcus sp.: five-membered iminocyclitol complex'''<br /> | ||
| - | == | + | ==Endo-glycoceramidase II from Rhodococcus sp.: five-membered iminocyclitol complex== |
| - | + | <StructureSection load='2oym' size='340' side='right'caption='[[2oym]], [[Resolution|resolution]] 1.86Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[2oym]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYM FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MNI:N-{[(2R,3R,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PYRROLIDIN-2-YL]METHYL}-4-(DIMETHYLAMINO)BENZAMIDE'>MNI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oym OCA], [https://pdbe.org/2oym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oym RCSB], [https://www.ebi.ac.uk/pdbsum/2oym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oym ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | [ | + | == Function == |
| - | [[ | + | [https://www.uniprot.org/uniprot/O33853_RHOSO O33853_RHOSO] |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oym_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oym ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Rhodococcus sp]] | ||
| + | [[Category: Caines MEC]] | ||
| + | [[Category: Strynadka NCJ]] | ||
Current revision
Endo-glycoceramidase II from Rhodococcus sp.: five-membered iminocyclitol complex
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