2rml

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[[Image:2rml.png|left|200px]]
 
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==Solution structure of the N-terminal soluble domains of Bacillus subtilis CopA==
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The line below this paragraph, containing "STRUCTURE_2rml", creates the "Structure Box" on the page.
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<StructureSection load='2rml' size='340' side='right'caption='[[2rml]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2rml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RML FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rml OCA], [https://pdbe.org/2rml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rml RCSB], [https://www.ebi.ac.uk/pdbsum/2rml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rml ProSAT]</span></td></tr>
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{{STRUCTURE_2rml| PDB=2rml | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/COPA_BACSU COPA_BACSU] Involved in copper export.<ref>PMID:12644235</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/2rml_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rml ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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CopA, a P-type ATPase from Bacillus subtilis, plays a major role in the resistance of the cell to copper by effecting the export of the metal across the cytoplasmic membrane. The N-terminus of the protein features two soluble domains (a and b), that each contain a Cu(I)-binding motif, MTCAAC. We have generated a stable form of the wild-type two-domain protein, CopAab, and determined its solution structure. This was found to be similar to that reported previously for a higher stability S46V variant, with minor differences mostly confined to the Ser(46)-containing beta3-strand of domain a. Chemical-shift analysis demonstrated that the two Cu(I)-binding motifs, located at different ends of the protein molecule, are both able to participate in Cu(I) binding and that Cu(I) is in rapid exchange between protein molecules. Surprisingly, UV-visible and fluorescence spectroscopy indicate very different modes of Cu(I) binding below and above a level of 1 Cu(I) per protein, consistent with a major structural change occurring above 1 Cu(I) per CopAab. Analytical equilibrium centrifugation and gel filtration results show that this is a result of Cu(I)-mediated dimerization of the protein. The resulting species is highly luminescent, indicating the presence of a solvent-shielded Cu(I) cluster.
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===Solution structure of the N-terminal soluble domains of Bacillus subtilis CopA===
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Structure and Cu(I)-binding properties of the N-terminal soluble domains of Bacillus subtilis CopA.,Singleton C, Banci L, Ciofi-Baffoni S, Tenori L, Kihlken MA, Boetzel R, Le Brun NE Biochem J. 2008 May 1;411(3):571-9. PMID:18215122<ref>PMID:18215122</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18215122}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2rml" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18215122 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18215122}}
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==About this Structure==
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[[2rml]] is a 1 chain structure of [[ATPase]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RML OCA].
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==See Also==
==See Also==
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*[[ATPase]]
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*[[ATPase 3D structures|ATPase 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:18215122</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Banci, L.]]
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[[Category: Large Structures]]
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[[Category: Bertini, I.]]
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[[Category: Banci L]]
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[[Category: Boetzel, R.]]
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[[Category: Bertini I]]
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[[Category: Brun, N E.Le.]]
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[[Category: Boetzel R]]
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[[Category: Ciofi-Baffoni, S.]]
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[[Category: Ciofi-Baffoni S]]
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[[Category: Kihlken, M A.]]
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[[Category: Kihlken MA]]
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[[Category: Singleton, C.]]
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[[Category: Le Brun NE]]
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[[Category: Tenori, L.]]
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[[Category: Singleton C]]
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[[Category: Atp-binding]]
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[[Category: Tenori L]]
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[[Category: Copa]]
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[[Category: Copper]]
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[[Category: Copper transport]]
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[[Category: Hydrolase]]
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[[Category: Ion transport]]
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[[Category: Magnesium]]
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[[Category: Membrane]]
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[[Category: Metal-binding]]
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[[Category: Nucleotide-binding]]
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[[Category: P-type atpase]]
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[[Category: Phosphorylation]]
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[[Category: Transmembrane]]
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[[Category: Transport]]
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Current revision

Solution structure of the N-terminal soluble domains of Bacillus subtilis CopA

PDB ID 2rml

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