2k59

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:49, 20 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2k59.png|left|200px]]
 
-
<!--
+
==NMR structures of the second transmembrane domain of the neuronal acetylcholine receptor beta 2 subunit==
-
The line below this paragraph, containing "STRUCTURE_2k59", creates the "Structure Box" on the page.
+
<StructureSection load='2k59' size='340' side='right'caption='[[2k59]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k59]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K59 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k59 OCA], [https://pdbe.org/2k59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k59 RCSB], [https://www.ebi.ac.uk/pdbsum/2k59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k59 ProSAT]</span></td></tr>
-
{{STRUCTURE_2k59| PDB=2k59 | SCENE= }}
+
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/ACHB2_HUMAN ACHB2_HUMAN] Defects in CHRNB2 are the cause of nocturnal frontal lobe epilepsy type 3 (ENFL3) [MIM:[https://omim.org/entry/605375 605375]. ENFL3 is an autosomal dominant epilepsy characterized by nocturnal seizures with hyperkinetic automatisms and poorly organized stereotyped movements.<ref>PMID:11062464</ref> <ref>PMID:11104662</ref>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ACHB2_HUMAN ACHB2_HUMAN] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane permeable to sodiun ions.<ref>PMID:22361591</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Structure and backbone dynamics of a selectively [(15)N]Leu-labeled 28-residue segment of the extended second transmembrane domain (TM2e) of the human neuronal nicotinic acetylcholine receptor (nAChR) beta(2) subunit were studied by (1)H and (15)N solution-state NMR in dodecylphosphocholine micelles. The TM2e structure was determined on the basis of the nuclear Overhauser effects (NOEs) and the hydrogen bond restraints, which were inferred from the presence of H(alpha)(i)-H(N)(i+3), H(alpha)(i)-H(beta)(i+3), and H(alpha)(i)-H(N)(i+4) NOE connectivity and from the slow amide hydrogen exchange with D(2)O. The TM2e structure of the nAChR beta(2) subunit contains a helical region between T4 and K22. Backbone dynamics were calculated using the model-free approach based on the (15)N relaxation rate constants, R(1) and R(2), and on the (15)N-[(1)H] NOE. The data acquired at 9.4 and 14.1 T and calculations using different dynamic models demonstrated no conformational exchange and internal motions on the nanosecond time scale. The global tumbling time of TM2e in micelles was 14.4 +/- 0.2 ns; the NOE values were greater than 0.63 at 9.4 T, and the order parameter, S(2), was 0.83-0.96 for all (15)N-labeled leucine residues, suggesting a restricted internal motion. This is the first report of NMR structure and backbone dynamics of the second transmembrane domain of the human nAChR beta(2) subunit in a membrane-mimetic environment, providing the basis for subsequent studies of subunit interactions in the transmembrane domain complex of the neuronal nAChR.
-
===NMR structures of the second transmembrane domain of the neuronal acetylcholine receptor beta 2 subunit===
+
NMR structure and dynamics of the second transmembrane domain of the neuronal acetylcholine receptor beta 2 subunit.,Yushmanov VE, Xu Y, Tang P Biochemistry. 2003 Nov 11;42(44):13058-65. PMID:14596621<ref>PMID:14596621</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14596621}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2k59" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14596621 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_14596621}}
+
-
 
+
-
==About this Structure==
+
-
[[2k59]] is a 1 chain structure of [[Ion channels]]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K59 OCA].
+
==See Also==
==See Also==
-
*[[Ion channels]]
+
*[[Acetyl choline receptor 3D structures|Acetyl choline receptor 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:14596621</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Bondarenko, V.]]
+
</StructureSection>
-
[[Category: Tang, P.]]
+
[[Category: Homo sapiens]]
-
[[Category: Xu, Y.]]
+
[[Category: Large Structures]]
-
[[Category: Yushmanov, V.]]
+
[[Category: Bondarenko V]]
-
[[Category: Beta 2 subunit]]
+
[[Category: Tang P]]
-
[[Category: Cell junction]]
+
[[Category: Xu Y]]
-
[[Category: Disease mutation]]
+
[[Category: Yushmanov V]]
-
[[Category: Epilepsy]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Ion transport]]
+
-
[[Category: Ionic channel]]
+
-
[[Category: Membrane]]
+
-
[[Category: Neuronal acetylcholine receptor]]
+
-
[[Category: Nmr]]
+
-
[[Category: Polymorphism]]
+
-
[[Category: Postsynaptic cell membrane]]
+
-
[[Category: Second transmembrane domain]]
+
-
[[Category: Synapse]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Transport]]
+
-
[[Category: Transport protein]]
+

Current revision

NMR structures of the second transmembrane domain of the neuronal acetylcholine receptor beta 2 subunit

PDB ID 2k59

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools