This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2rk9
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2rk9" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rk9, resolution 1.60Å" /> '''The crystal structur...) |
|||
| (16 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2rk9.gif|left|200px]]<br /><applet load="2rk9" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2rk9, resolution 1.60Å" /> | ||
| - | '''The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01'''<br /> | ||
| - | == | + | ==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01== |
| - | + | <StructureSection load='2rk9' size='340' side='right'caption='[[2rk9]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | [[ | + | <table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibs1 Vibs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RK9 FirstGlance]. <br> |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | [[ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 VIBS1])</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [https://pdbe.org/2rk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr> | |
| - | [ | + | </table> |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | [ | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk9_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [[ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | + | </jmolCheckbox> | |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rk9 ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | + | ==See Also== | |
| + | *[[Dioxygenase 3D structures|Dioxygenase 3D structures]] | ||
| + | *[[Glyoxalase 3D structures|Glyoxalase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Vibs1]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Eswaramoorthy, S]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Sauder, J M]] | ||
| + | [[Category: Swaminathan, S]] | ||
| + | [[Category: Tyagi, R]] | ||
| + | [[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]] | ||
| + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
| + | [[Category: Oxidoreductase]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
Current revision
The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01
| |||||||||||
Categories: Large Structures | Vibs1 | Burley, S K | Eswaramoorthy, S | Structural genomic | Sauder, J M | Swaminathan, S | Tyagi, R | Glyoxalase/bleomycin resistance protein/dioxygenase superfamily | NYSGXRC, New York SGX Research Center for Structural Genomics | Oxidoreductase | PSI, Protein structure initiative
