This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1z5s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1z5s" [edit=sysop:move=sysop])
Current revision (06:21, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1z5s.png|left|200px]]
 
-
<!--
+
==Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2==
-
The line below this paragraph, containing "STRUCTURE_1z5s", creates the "Structure Box" on the page.
+
<StructureSection load='1z5s' size='340' side='right'caption='[[1z5s]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1z5s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z5S FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.01&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z5s OCA], [https://pdbe.org/1z5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z5s RCSB], [https://www.ebi.ac.uk/pdbsum/1z5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z5s ProSAT]</span></td></tr>
-
{{STRUCTURE_1z5s| PDB=1z5s | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2===
+
[https://www.uniprot.org/uniprot/UBC9_HUMAN UBC9_HUMAN] Accepts the ubiquitin-like proteins SUMO1, SUMO2, SUMO3 and SUMO4 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Necessary for sumoylation of FOXL2 and KAT5. Essential for nuclear architecture and chromosome segregation.<ref>PMID:8668529</ref> <ref>PMID:11451954</ref> <ref>PMID:15809060</ref> <ref>PMID:19744555</ref> <ref>PMID:19638400</ref> <ref>PMID:17466333</ref> <ref>PMID:20077568</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15931224}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15931224 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z5/1z5s_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_15931224}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z5s ConSurf].
-
[[1z5s]] is a 4 chain structure of [[Nucleoporin]] and [[SUMO]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z5S OCA].
+
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Nucleoporin]]
+
*[[Nucleoporin 3D structures|Nucleoporin 3D structures]]
-
*[[SUMO]]
+
*[[SUMO 3D Structures|SUMO 3D Structures]]
-
 
+
*[[SUMO conjugating enzyme Ubc9|SUMO conjugating enzyme Ubc9]]
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:15931224</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Ubiquitin--protein ligase]]
+
[[Category: Large Structures]]
-
[[Category: Lima, C D.]]
+
[[Category: Lima CD]]
-
[[Category: Reverter, D.]]
+
[[Category: Reverter D]]
-
[[Category: E3]]
+
-
[[Category: Ligase]]
+
-
[[Category: Nuclear pore complex]]
+
-
[[Category: Sumo]]
+
-
[[Category: Ubc9]]
+

Current revision

Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2

PDB ID 1z5s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools