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1ml5

From Proteopedia

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[[Image:1ml5.png|left|200px]]
 
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<!--
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==Structure of the E. coli ribosomal termination complex with release factor 2==
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The line below this paragraph, containing "STRUCTURE_1ml5", creates the "Structure Box" on the page.
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<SX load='1ml5' size='340' side='right' viewer='molstar' caption='[[1ml5]], [[Resolution|resolution]] 14.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ml5]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ML5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ML5 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 14&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1MA:6-HYDRO-1-METHYLADENOSINE-5-MONOPHOSPHATE'>1MA</scene>, <scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=H2U:5,6-DIHYDROURIDINE-5-MONOPHOSPHATE'>H2U</scene>, <scene name='pdbligand=M2G:N2-DIMETHYLGUANOSINE-5-MONOPHOSPHATE'>M2G</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=YG:WYBUTOSINE'>YG</scene></td></tr>
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{{STRUCTURE_1ml5| PDB=1ml5 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ml5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ml5 OCA], [https://pdbe.org/1ml5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ml5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ml5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ml5 ProSAT]</span></td></tr>
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</table>
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===Structure of the E. coli ribosomal termination complex with release factor 2===
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== Function ==
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[https://www.uniprot.org/uniprot/RF2_ECOLI RF2_ECOLI] Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.[HAMAP-Rule:MF_00094]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_12511961}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 12511961 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ml/1ml5_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_12511961}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[1ml5]] is a 45 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]], [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S15]], [[Ribosomal protein S17]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]] and [[Ribosomal protein THX]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ML5 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ml5 ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[Ribosomal protein L1]]
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*[[MHC 3D structures|MHC 3D structures]]
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*[[Ribosomal protein L2]]
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*[[MHC I 3D structures|MHC I 3D structures]]
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*[[Ribosomal protein L3]]
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*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
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*[[Ribosomal protein L4]]
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*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
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*[[Ribosomal protein L5]]
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__TOC__
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*[[Ribosomal protein L6]]
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</SX>
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*[[Ribosomal protein S10]]
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*[[Ribosomal protein S11]]
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*[[Ribosomal protein S12]]
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*[[Ribosomal protein S13]]
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*[[Ribosomal protein S15]]
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*[[Ribosomal protein S17]]
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*[[Ribosomal protein S2]]
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*[[Ribosomal protein S20]]
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*[[Ribosomal protein S3]]
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*[[Ribosomal protein S4]]
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*[[Ribosomal protein THX]]
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==Reference==
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<ref group="xtra">PMID:12511961</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Ehrenberg, M.]]
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[[Category: Large Structures]]
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[[Category: Heel, M van.]]
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[[Category: Ehrenberg M]]
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[[Category: Klaholz, B P.]]
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[[Category: Klaholz BP]]
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[[Category: Myasnikov, A G.]]
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[[Category: Myasnikov AG]]
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[[Category: Orlova, E V.]]
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[[Category: Orlova EV]]
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[[Category: Pape, T.]]
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[[Category: Pape T]]
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[[Category: Vestergaard, B.]]
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[[Category: Vestergaard B]]
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[[Category: Zavialov, A V.]]
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[[Category: Zavialov AV]]
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[[Category: Angular reconstitution]]
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[[Category: Van Heel M]]
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[[Category: Cryo-eletron microscopy]]
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[[Category: E. coli]]
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[[Category: Release factor]]
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[[Category: Ribosome]]
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[[Category: Termination of protein synthesis]]
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Current revision

Structure of the E. coli ribosomal termination complex with release factor 2

1ml5, resolution 14.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

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