This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ytz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ytz.png|left|200px]]
 
-
<!--
+
==Crystal structure of skeletal muscle troponin in the Ca2+-activated state==
-
The line below this paragraph, containing "STRUCTURE_1ytz", creates the "Structure Box" on the page.
+
<StructureSection load='1ytz' size='340' side='right'caption='[[1ytz]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ytz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YTZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YTZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DR6:ALPHA-[4-(1,1,3,3+-+TETRAMETHYLBUTYL)PHENYL]-OMEGA-HYDROXY-POLY(OXY-1,2-ETHANEDIYL)'>DR6</scene></td></tr>
-
{{STRUCTURE_1ytz| PDB=1ytz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ytz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ytz OCA], [https://pdbe.org/1ytz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ytz RCSB], [https://www.ebi.ac.uk/pdbsum/1ytz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ytz ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of skeletal muscle troponin in the Ca2+-activated state===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/TNNT3_CHICK TNNT3_CHICK] Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15784741}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15784741 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yt/1ytz_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15784741}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1ytz]] is a 3 chain structure of [[Troponin]] with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YTZ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ytz ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Troponin]]
+
*[[Troponin 3D structures|Troponin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:15784741</ref><references group="xtra"/>
+
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Cooke, R.]]
+
[[Category: Large Structures]]
-
[[Category: Fletterick, R J.]]
+
[[Category: Cooke R]]
-
[[Category: Karatzaferi, C.]]
+
[[Category: Fletterick RJ]]
-
[[Category: Malanina, G G.]]
+
[[Category: Karatzaferi C]]
-
[[Category: Mendelson, R A.]]
+
[[Category: Malanina GG]]
-
[[Category: Stone, D B.]]
+
[[Category: Mendelson RA]]
-
[[Category: Vinogradova, M V.]]
+
[[Category: Stone DB]]
-
[[Category: Actin binding]]
+
[[Category: Vinogradova MV]]
-
[[Category: Calcium]]
+
-
[[Category: Contractile protein]]
+
-
[[Category: Muscle]]
+
-
[[Category: Thin filament]]
+
-
[[Category: Troponin]]
+

Current revision

Crystal structure of skeletal muscle troponin in the Ca2+-activated state

PDB ID 1ytz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ytz"
Personal tools