2ywb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ywb" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ywb, resolution 2.10&Aring;" /> '''Crystal structure of...)
Current revision (13:55, 13 March 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ywb.gif|left|200px]]<br /><applet load="2ywb" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ywb, resolution 2.10&Aring;" />
 
-
'''Crystal structure of GMP synthetase from Thermus thermophilus'''<br />
 
-
==About this Structure==
+
==Crystal structure of GMP synthetase from Thermus thermophilus==
-
2YWB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWB OCA].
+
<StructureSection load='2ywb' size='340' side='right'caption='[[2ywb]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Thermus thermophilus]]
+
<table><tr><td colspan='2'>[[2ywb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWB FirstGlance]. <br>
-
[[Category: Baba, S.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
[[Category: Ishii, T.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywb OCA], [https://pdbe.org/2ywb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywb RCSB], [https://www.ebi.ac.uk/pdbsum/2ywb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywb ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywb TOPSAN]</span></td></tr>
-
[[Category: Kanagawa, M.]]
+
</table>
-
[[Category: Kawai, G.]]
+
== Function ==
-
[[Category: Kuramitsu, S.]]
+
[https://www.uniprot.org/uniprot/GUAA_THET8 GUAA_THET8] Catalyzes the synthesis of GMP from XMP (By similarity).
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
== Evolutionary Conservation ==
-
[[Category: Sampei, G.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Yanai, H.]]
+
Check<jmol>
-
[[Category: Yokoyama, S.]]
+
<jmolCheckbox>
-
[[Category: atp binding]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywb_consurf.spt"</scriptWhenChecked>
-
[[Category: gmp synthetase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: ligase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: national project on protein structural and functional analyses]]
+
</jmolCheckbox>
-
[[Category: nppsfa]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywb ConSurf].
-
[[Category: purine nucleotide biosynthetic pathway]]
+
<div style="clear:both"></div>
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomics]]
+
-
[[Category: xmp binding]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:46:11 2008''
+
==See Also==
 +
*[[GMP synthase|GMP synthase]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Baba S]]
 +
[[Category: Ishii T]]
 +
[[Category: Kanagawa M]]
 +
[[Category: Kawai G]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Sampei G]]
 +
[[Category: Yanai H]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of GMP synthetase from Thermus thermophilus

PDB ID 2ywb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ywb"
Personal tools