2ywj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ywj" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ywj, resolution 1.90&Aring;" /> '''Crystal structure of...)
Current revision (13:55, 13 March 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ywj.jpg|left|200px]]<br /><applet load="2ywj" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ywj, resolution 1.90&Aring;" />
 
-
'''Crystal structure of uncharacterized conserved protein from Methanocaldococcus jannaschii'''<br />
 
-
==About this Structure==
+
==Crystal structure of uncharacterized conserved protein from Methanocaldococcus jannaschii==
-
2YWJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWJ OCA].
+
<StructureSection load='2ywj' size='340' side='right'caption='[[2ywj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Methanocaldococcus jannaschii]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ywj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWJ FirstGlance]. <br>
-
[[Category: Ebihara, A.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
[[Category: Kuramitsu, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywj OCA], [https://pdbe.org/2ywj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywj RCSB], [https://www.ebi.ac.uk/pdbsum/2ywj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywj ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywj TOPSAN]</span></td></tr>
-
[[Category: Manzoku, M.]]
+
</table>
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
== Function ==
-
[[Category: Yokoyama, S.]]
+
[https://www.uniprot.org/uniprot/PDXT_METJA PDXT_METJA] Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity).
-
[[Category: national project on protein structural and functional analyses]]
+
== Evolutionary Conservation ==
-
[[Category: nppsfa]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
Check<jmol>
-
[[Category: rsgi]]
+
<jmolCheckbox>
-
[[Category: structural genomics]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywj_consurf.spt"</scriptWhenChecked>
-
[[Category: transferase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: uncharacterized conserved protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:46:25 2008''
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Methanocaldococcus jannaschii DSM 2661]]
 +
[[Category: Ebihara A]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Manzoku M]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of uncharacterized conserved protein from Methanocaldococcus jannaschii

PDB ID 2ywj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools