1tjt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1tjt" [edit=sysop:move=sysop])
Current revision (07:27, 25 October 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1tjt.png|left|200px]]
 
-
<!--
+
==X-ray structure of the human alpha-actinin isoform 3 at 2.2A resolution==
-
The line below this paragraph, containing "STRUCTURE_1tjt", creates the "Structure Box" on the page.
+
<StructureSection load='1tjt' size='340' side='right'caption='[[1tjt]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1tjt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TJT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.19&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tjt OCA], [https://pdbe.org/1tjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tjt RCSB], [https://www.ebi.ac.uk/pdbsum/1tjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tjt ProSAT]</span></td></tr>
-
{{STRUCTURE_1tjt| PDB=1tjt | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ACTN3_HUMAN ACTN3_HUMAN] F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tj/1tjt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tjt ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Alpha-actinin is the major F-actin crosslinking protein in both muscle and non-muscle cells. We report the crystal structure of the actin binding domain of human muscle alpha-actinin-3, which is formed by two consecutive calponin homology domains arranged in a "closed" conformation. Structural studies and available biochemical data on actin binding domains suggest that two calponin homology domains come in a closed conformation in the native apo-form, and that conformational changes involving the relative orientation of the two calponin homology domains are required for efficient binding to actin filaments. The actin binding activity of muscle isoforms is supposed to be regulated by phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2), which binds to the second calponin homology domain. On the basis of structural analysis we propose a distinct binding site for PtdIns(4,5)P2, where the fatty acid moiety would be oriented in a direction that allows it to interact with the linker sequence between the actin binding domain and the first spectrin-like repeat, regulating thereby the binding of the C-terminal calmodulin-like domain to this linker.
-
===X-ray structure of the human alpha-actinin isoform 3 at 2.2A resolution===
+
The crystal structure of the actin binding domain from alpha-actinin in its closed conformation: structural insight into phospholipid regulation of alpha-actinin.,Franzot G, Sjoblom B, Gautel M, Djinovic Carugo K J Mol Biol. 2005 Apr 22;348(1):151-65. PMID:15808860<ref>PMID:15808860</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15808860}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1tjt" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15808860 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15808860}}
+
-
 
+
-
==About this Structure==
+
-
[[1tjt]] is a 1 chain structure of [[Actinin]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TJT OCA].
+
==See Also==
==See Also==
-
*[[Actinin]]
+
*[[Actinin 3D structures|Actinin 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:15808860</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Carugo, K Djinovic.]]
+
[[Category: Large Structures]]
-
[[Category: Franzot, G.]]
+
[[Category: Djinovic Carugo K]]
-
[[Category: Gautel, M.]]
+
[[Category: Franzot G]]
-
[[Category: Sjoblom, B.]]
+
[[Category: Gautel M]]
-
[[Category: Actin binding domain]]
+
[[Category: Sjoblom B]]
-
[[Category: Calponin homology domain]]
+
[[Category: Z-disk]]
-
[[Category: Contractile protein]]
+

Current revision

X-ray structure of the human alpha-actinin isoform 3 at 2.2A resolution

PDB ID 1tjt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools