2rdo

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m (Protected "2rdo" [edit=sysop:move=sysop])
Current revision (09:21, 21 February 2024) (edit) (undo)
 
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[[Image:2rdo.png|left|200px]]
 
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==50S subunit with EF-G(GDPNP) and RRF bound==
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The line below this paragraph, containing "STRUCTURE_2rdo", creates the "Structure Box" on the page.
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<SX load='2rdo' size='340' side='right' viewer='molstar' caption='[[2rdo]], [[Resolution|resolution]] 9.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2rdo]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 9.1&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdo OCA], [https://pdbe.org/2rdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdo RCSB], [https://www.ebi.ac.uk/pdbsum/2rdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdo ProSAT]</span></td></tr>
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{{STRUCTURE_2rdo| PDB=2rdo | SCENE= }}
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</table>
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== Function ==
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===50S subunit with EF-G(GDPNP) and RRF bound===
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[https://www.uniprot.org/uniprot/RL25_ECOLI RL25_ECOLI] This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Binds to the 5S rRNA independently of L5 and L18. Not required for binding of the 5S rRNA/L5/L18 subcomplex to 23S rRNA.[HAMAP-Rule:MF_01336]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_17996252}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 17996252 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_17996252}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdo ConSurf].
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[[2rdo]] is a 33 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L4]], [[Ribosomal protein L5]] and [[Ribosomal protein L6]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDO OCA].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[Ribosomal protein L1]]
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*[[Elongation factor 3D structures|Elongation factor 3D structures]]
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*[[Ribosomal protein L2]]
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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*[[Ribosomal protein L3]]
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*[[Ribosome recycling factor|Ribosome recycling factor]]
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*[[Ribosomal protein L4]]
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__TOC__
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*[[Ribosomal protein L5]]
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</SX>
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*[[Ribosomal protein L6]]
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==Reference==
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<ref group="xtra">PMID:17996252</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Ehrenberg, M.]]
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[[Category: Large Structures]]
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[[Category: Frank, J.]]
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[[Category: Ehrenberg M]]
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[[Category: Gao, N.]]
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[[Category: Frank J]]
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[[Category: Zavialov, A V.]]
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[[Category: Gao N]]
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[[Category: 50s subunit]]
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[[Category: Zavialov AV]]
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[[Category: Antibiotic resistance]]
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[[Category: Cryo-em]]
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[[Category: Cytoplasm]]
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[[Category: Ef-g]]
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[[Category: Elongation factor g]]
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[[Category: Gdpnp]]
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[[Category: Gtp-binding]]
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[[Category: Metal-binding]]
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[[Category: Methylation]]
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[[Category: Nucleotide-binding]]
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[[Category: Phosphoprotein]]
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[[Category: Protein biosynthesis]]
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[[Category: Real-space refinement]]
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[[Category: Repressor]]
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[[Category: Ribonucleoprotein]]
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[[Category: Ribosomal protein]]
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[[Category: Ribosome recycling factor]]
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[[Category: Rna-binding]]
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[[Category: Rrf]]
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[[Category: Rrna-binding]]
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[[Category: Transcription]]
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[[Category: Transcription regulation]]
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[[Category: Transcription termination]]
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[[Category: Translation regulation]]
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[[Category: Trna-binding]]
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[[Category: Zinc]]
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Current revision

50S subunit with EF-G(GDPNP) and RRF bound

2rdo, resolution 9.10Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

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