1spe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:32, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1spe.png|left|200px]]
 
-
<!--
+
==SPERM WHALE NATIVE CO MYOGLOBIN AT PH 4.0, TEMP 4C==
-
The line below this paragraph, containing "STRUCTURE_1spe", creates the "Structure Box" on the page.
+
<StructureSection load='1spe' size='340' side='right'caption='[[1spe]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1spe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SPE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1spe| PDB=1spe | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1spe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spe OCA], [https://pdbe.org/1spe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1spe RCSB], [https://www.ebi.ac.uk/pdbsum/1spe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1spe ProSAT]</span></td></tr>
-
 
+
</table>
-
===SPERM WHALE NATIVE CO MYOGLOBIN AT PH 4.0, TEMP 4C===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_8642596}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 8642596 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1spe_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_8642596}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1spe]] is a 1 chain structure of [[Myoglobin]] with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPE OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1spe ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Myoglobin]]
+
*[[Myoglobin 3D structures|Myoglobin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:8642596</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Physeter catodon]]
[[Category: Physeter catodon]]
-
[[Category: Phillips, G N.]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Yang, F.]]
+
[[Category: Yang F]]
-
[[Category: Conformational change]]
+
-
[[Category: Oxygen storage]]
+
-
[[Category: Ph value]]
+
-
[[Category: Protein structure]]
+
-
[[Category: Sperm whale myoglobin]]
+
-
[[Category: X-ray crystallography]]
+

Current revision

SPERM WHALE NATIVE CO MYOGLOBIN AT PH 4.0, TEMP 4C

PDB ID 1spe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1spe"
Personal tools