3m3b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3m3b" [edit=sysop:move=sysop])
Current revision (10:23, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3m3b.png|left|200px]]
 
-
<!--
+
==The roles of glutamates and metal ions in a rationally designed nitric oxide reductase based on myoglobin: Zn(II)-I107E FeBMb (Zn(II) binding to FeB site)==
-
The line below this paragraph, containing "STRUCTURE_3m3b", creates the "Structure Box" on the page.
+
<StructureSection load='3m3b' size='340' side='right'caption='[[3m3b]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3m3b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M3B FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3m3b| PDB=3m3b | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m3b OCA], [https://pdbe.org/3m3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m3b RCSB], [https://www.ebi.ac.uk/pdbsum/3m3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m3b ProSAT]</span></td></tr>
-
 
+
</table>
-
===The roles of glutamates and metal ions in a rationally designed nitric oxide reductase based on myoglobin: Zn(II)-I107E FeBMb (Zn(II) binding to FeB site)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20421510}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20421510 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m3/3m3b_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20421510}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3m3b]] is a 1 chain structure of [[Myoglobin]] with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M3B OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m3b ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Myoglobin]]
+
*[[Myoglobin 3D structures|Myoglobin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:20421510</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Physeter catodon]]
[[Category: Physeter catodon]]
-
[[Category: Gao, Y G.]]
+
[[Category: Gao Y-G]]
-
[[Category: Lin, Y W.]]
+
[[Category: Lin Y-W]]
-
[[Category: Lu, Y.]]
+
[[Category: Lu Y]]
-
[[Category: Miner, K D.]]
+
[[Category: Miner KD]]
-
[[Category: Robinson, H.]]
+
[[Category: Robinson H]]
-
[[Category: Tian, S.]]
+
[[Category: Tian S]]
-
[[Category: Yeung, N.]]
+
[[Category: Yeung N]]
-
[[Category: Alpha helix]]
+
-
[[Category: Heme protein]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: No reductase]]
+
-
[[Category: Oxygen transport]]
+

Current revision

The roles of glutamates and metal ions in a rationally designed nitric oxide reductase based on myoglobin: Zn(II)-I107E FeBMb (Zn(II) binding to FeB site)

PDB ID 3m3b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools